PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA56987.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | YABBY | ||||||||
Protein Properties | Length: 173aa MW: 19410.1 Da PI: 8.4873 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 183.7 | 1e-56 | 8 | 148 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklse 103 +eq Cyv+CnfCntilav+vPs+ +++vvtvrCG+C++ll vn+ q l h ++++ + +++ s+s +++++++ PKA56987.1 8 PFPEQFCYVHCNFCNTILAVNVPSSNMLNVVTVRCGYCANLLCVNIGALLQNLIPYVH----------QKME----------SDRNCGSSSSAMYSMET 86 5689******************************************998877665554..........3332..........33445555555555554 PP YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++ +p p i PP krqrvPsaynrfikeeiqrika+nP+ishreafsaaaknWahfP+ihfgl PKA56987.1 87 SQEK-LP---P-IPPPGKRQRVPSAYNRFIKEEIQRIKANNPEISHREAFSAAAKNWAHFPHIHFGL 148 4433.33...3.789**************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence |
MSTQIAQPFP EQFCYVHCNF CNTILAVNVP SSNMLNVVTV RCGYCANLLC VNIGALLQNL 60 IPYVHQKMES DRNCGSSSSA MYSMETSQEK LPPIPPPGKR QRVPSAYNRF IKEEIQRIKA 120 NNPEISHREA FSAAAKNWAH FPHIHFGLSS SLDGSKQQVK YDESHPSTRD PKV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 4e-60 | YABBY family protein |