PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55717.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 293aa MW: 32692.2 Da PI: 5.445

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55717.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36	1.6e-11	16	50	1	36
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRt 36 +g+WT+eEd++l+ +++q+G g+W++ ++ g R+ PKA55717.1 16 KGSWTPEEDLRLISYIRQHGHGNWRALPKNAG-LRS 50 799***************************99.787 PP
2	Myb_DNA-binding	50.6	4.3e-16	100	143	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE++ +++++++lG++ W++Ia++++ gRt++++k+ w++ PKA55717.1 100 RGSFSKEEEDAIIKLHELLGNK-WSKIASCLP-GRTDNEIKNVWNT 143 899*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence
MGRGRAPCCE KVGLKKGSWT PEEDLRLISY IRQHGHGNWR ALPKNAGLRS SSFSLSSLSL 60 PLFLPFVNGD VNLLNCVCLL RCGKSCRLRW INYLCPNIKR GSFSKEEEDA IIKLHELLGN 120 KWSKIASCLP GRTDNEIKNV WNTRLKKKLE LAKNSTNSPQ TMLLTSVKAV HVDPPTKTSS 180 DQTEIPINPI LNLGDMPGHS SNVPPPPPTT ASTSCLLTSD KILLDETLDI SVEPELWNDN 240 TIDVDGEVRQ WLEYLEEELG LFGDGGGEEV EGQEKEGDPV RIYFIEHNFL DTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	1e-57	MYB family protein