PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA55180.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 276aa    MW: 30357.8 Da    PI: 6.6735
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA55180.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.82.2e-161152344
                --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                i n+  r  t+ kRr g++KK +ELS+LCd++++ i++s++ 
  PKA55180.1 11 ICNDATRRATLKKRRRGLMKKVKELSILCDVRACAIVYSPHE 52
                679999*********************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MARKKVTLAW ICNDATRRAT LKKRRRGLMK KVKELSILCD VRACAIVYSP HETQPEVWPS  60
VAEAARILAR FRSMPEIEQS KKMLDQESFL RQRVARLHDQ LNRLQRENHE LEAAAVLREC  120
LAGSSLLDLR IEELASLAWM LEHKAKVVQE RIDQHLILAA AAPELEMPPM EGAGAEVDAG  180
PLQPPGPPPP PPPPPPLLSL IGDGKFIPCH EGEFRWIPGG SGGHEAYSGA AAGPAPVGER  240
DYFGGGGGGG EVAELGLLDH HDKQQSGWEN CFFHLY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVTLAWICNDATRRATLKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-40M-type_MADS family protein