PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54844.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

HRT-like

Protein Properties

Length: 470aa MW: 52350.9 Da PI: 9.1597

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54844.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	50.5	3.5e-16	263	293	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv++++GsvC+++P++gRKRCe HKG++i PKA54844.1 263 ICGVATGHGSVCRNSPAPGRKRCEDHKGKKI 293 8***************************997 PP
2	HRT-like	55.4	1e-17	306	334	2	30
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmR 30 CG+il+dGs+C+++P++gRKRCe HKG+R PKA54844.1 306 CGIILKDGSFCMETPAHGRKRCELHKGRR 334 ****************************9 PP
3	HRT-like	49.9	5.2e-16	380	409	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+i ++G vC+r Pv+gRKRCeeHKGmR PKA54844.1 380 ICGIINGNGCVCRRLPVPGRKRCEEHKGMR 409 8****************************9 PP
4	HRT-like	54.7	1.7e-17	432	462	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil+ G vC+r+Pv+gRKRCe+HKG+R+ PKA54844.1 432 VCGVILSGGLVCMRSPVPGRKRCEAHKGRRV 462 7*****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MMARLKREDC KRTMHDSVFS KWEILIGPED WADHSLGKDG VERYRIHNLP AASSCPGLYE 60 LGLASIPTND GHRSRSSQKP GTDDIIVVYL GQADNVRIRL QEYGRSGSHL DHGNPINGRK 120 YYESSSLQCG PGLFRDIFAK GYSVLFRWTP INNKKEAEKT ESELLCIFDY AWNQRGNGAC 180 RHADILSKLN HKASVFSPLK TMQQWKHAIF DKKAGMKIDS SVPLLEEESP SHGLKGFLLP 240 RIIKFSGSQI QLFGNSFHND QIICGVATGH GSVCRNSPAP GRKRCEDHKG KKISGLSSTS 300 EKNSFCGIIL KDGSFCMETP AHGRKRCELH KGRRATADQR NLSHDDKEEN GFLCWRKPET 360 MVVAISSDQE VNESIEVSNI CGIINGNGCV CRRLPVPGRK RCEEHKGMRK TAKMMSLMGT 420 LQDPKEEDDL PVCGVILSGG LVCMRSPVPG RKRCEAHKGR RVMKTTASAL

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MMARLKREDC KRTMHDSVFS KWEILIGPED WADHSLGKDG VERYRIHNLP AASSCPGLYE  60
LGLASIPTND GHRSRSSQKP GTDDIIVVYL GQADNVRIRL QEYGRSGSHL DHGNPINGRK  120
YYESSSLQCG PGLFRDIFAK GYSVLFRWTP INNKKEAEKT ESELLCIFDY AWNQRGNGAC  180
RHADILSKLN HKASVFSPLK TMQQWKHAIF DKKAGMKIDS SVPLLEEESP SHGLKGFLLP  240
RIIKFSGSQI QLFGNSFHND QIICGVATGH GSVCRNSPAP GRKRCEDHKG KKISGLSSTS  300
EKNSFCGIIL KDGSFCMETP AHGRKRCELH KGRRATADQR NLSHDDKEEN GFLCWRKPET  360
MVVAISSDQE VNESIEVSNI CGIINGNGCV CRRLPVPGRK RCEEHKGMRK TAKMMSLMGT  420
LQDPKEEDDL PVCGVILSGG LVCMRSPVPG RKRCEAHKGR RVMKTTASAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	5e-93	HRT-like family protein