PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA54479.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family ERF
Protein Properties Length: 233aa    MW: 26241.7 Da    PI: 9.4996
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA54479.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-12109150351
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                  +GV++  k+ +W A I++      +k+++lg+ g+ eeAa+++++a+ 
  PKA54479.1 109 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGSQEEAARLYDRAAF 150
                 79**98..47*********4.....5********************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MVSLRRRRLL GLCSGKGSMP IELSGSIESI NVVENLSKNV NPFGIHPMSP VSLKHENPAN  60
VQEISISSST LSTTSSTKEE LNNCFLGKEV KRRKRHRRKH FDDQEPCIMR GVYFKNMKWQ  120
AAIKVDKKQI HLGTVGSQEE AARLYDRAAF MCGREPNFEL SEDEQRELKQ YSWDEFLTKT  180
RNAISIKKHQ KKTGGGRRKI SAIEFHCSDI ELERGASGSL STSDDGEPEA SAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18894KEVKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.13e-47ERF family protein