PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA54226.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 19928.5 Da PI: 5.1858 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.6 | 1.4e-17 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ r v+fskRr g++ KA+ L +LC++++av++fs+ g+ y + PKA54226.1 9 KKIENEDARLVSFSKRRSGLFNKASCLTTLCGVDAAVVVFSPAGTPYSF 57 68******************************************98887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
MGRQKIEIKK IENEDARLVS FSKRRSGLFN KASCLTTLCG VDAAVVVFSP AGTPYSFGSP 60 RVEMVVDRFL SSGREMEEPN FFRQHHATSV QELNRRCMEL ENQVEAAQAR RRALEERLSA 120 VAAVRDEPEE MEVEELEALK EALNQLKKMT DEHMKERAAG SSSSAAQNEA GPSTPLDLG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-24 | M-type_MADS family protein |