PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53673.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 331aa MW: 36738.1 Da PI: 7.4137

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53673.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	69	87	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 Cp+Cg F+++s+L +H++ PKA53673.1 69 CPKCGAIFPSWSSLFQHMK 87 ******************7 PP
2	zf-C2H2	16.5	2.4e-05	260	282	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk F + L H+r+H PKA53673.1 260 HECSICGKNFASGQALGGHMRRH 282 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence
MEIDHCCKVC GGTFLCGRSL ARHMRSHAAL GSSMVAEENP VCRYGLRANP KKTWRLNHGS 60 PENATDMLCP KCGAIFPSWS SLFQHMKCHN WKDEEDSWSN GTEEDDEEIE SQPDSEATAS 120 AGPRWKMKRR RLRRIAAISA SSPEYEKEQE DGALCLMMLS RGGSSVTDSS DKVSSAMEET 180 EKRSNSRLLV IEIDSQDEDG DQAGKNSKSD DRSKRRKYEC RTCGKIFDSH QGLGGHLSSQ 240 ARLNYVCQPA GPSPEKSRAH ECSICGKNFA SGQALGGHMR RHMLAGNRAA ASAVIQIVRK 300 KISQANFPDL NLPAPDDFDC EKFNGRFESW V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	132	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45120.1	4e-22	C2H2 family protein