PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA53520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 243aa MW: 26625.6 Da PI: 8.6047 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.6 | 1.2e-21 | 19 | 63 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 krie++ rqv fskRr g++KKA ELS+LC+ae+ +++fs+ gk PKA53520.1 19 KRIESEEARQVCFSKRRSGLFKKATELSILCGAEIGIVVFSPAGK 63 79*****************************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MMTVRKKRQS MGRQKIPMKR IESEEARQVC FSKRRSGLFK KATELSILCG AEIGIVVFSP 60 AGKPFSFGHP SLDYIIKRFA GGDGTRGMGP MGAAQGIDYG ALQELNINHA RLTEELEEQR 120 RRKEVLEAAI EALRCGDHRR ALPWEADVHE MGIEELESFQ RALEVLWRSV ASRREEIEIM 180 MEVETKAAVA AAAAAAATPM AYGGGGYVGG CNGLYLTPPS LLPGGGVAGG FYSRGLERPY 240 FWG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-34 | M-type_MADS family protein |