PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53419.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

WOX

Protein Properties

Length: 268aa MW: 29022.9 Da PI: 6.9935

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53419.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.3e-18	36	96	3	57
--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 R+ +t +q+++L +l+++ r p+a++++++++kl +++ ++V++WFqN++a+e++ PKA53419.1 36 ARWIPTGDQIRILRDLYYNygVRSPTADQIQRISSKLrqygKIEGKNVFYWFQNHKARERQ 96 7***************878************************************97 PP
2	Wus_type_Homeobox	107.8	6.6e-35	34	98	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +++RW Pt +Qi+iL++ly+ G+r+P++++iqri+++L++yGkie+kNVfyWFQN+kaRerqk+ PKA53419.1 34 SSARWIPTGDQIRILRDLYYnYGVRSPTADQIQRISSKLRQYGKIEGKNVFYWFQNHKARERQKK 98 689*************9868***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MEANYIQEQS NEDAHGGGGA PGGSKSSSYL CRQSSARWIP TGDQIRILRD LYYNYGVRSP 60 TADQIQRISS KLRQYGKIEG KNVFYWFQNH KARERQKKRL TADVSTSAAS SPAVNRPAGS 120 SYEAAQFSCS TPPADLHNFR GCYFAEGGGG GGGMKNGAGW YAHHDQLSSF PMLPWTYHCS 180 IGCPEAEAAP PRSIQTLPLF PVRAADDHEQ EDEERGVPDQ DHNCMVSGWN SPHRPRPLSG 240 GSGGGGGGGA AFLELSLNSY FFEPPSSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	5e-39	WOX family protein