PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53345.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 397aa MW: 46432.1 Da PI: 9.2867

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53345.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.00091	21	43	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C++Cg + s ks+ ++H+++H PKA53345.1 21 YYCEYCGICRSKKSLIMSHMQSH 43 89********************6 PP
2	zf-C2H2	17	1.6e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+ F+ +s+L +H ++H PKA53345.1 69 YACEECDAIFKKPSYLLQHKQSH 91 89******************999 PP
3	zf-C2H2	18.7	4.9e-06	97	121	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ s++rk++L+rH+ +H PKA53345.1 97 FTCPleDCHSSYRRKDHLNRHLLKH 121 89*********************99 PP
4	zf-C2H2	13.7	0.00019	126	151	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + Cp +C++ Fs k n +H ++ H PKA53345.1 126 FNCPteNCNQKFSYKGNVIKHVKNfH 151 78********************9988 PP
5	zf-C2H2	14	0.00015	163	187	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cg F++ s+L +H +H PKA53345.1 163 HVCQvpGCGNAFKHASQLWNHKDSH 187 689999***************9988 PP
6	zf-C2H2	17.5	1.1e-05	192	216	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk F+ +s L++H +H PKA53345.1 192 HVCQepGCGKAFKYPSRLRKHEDSH 216 689999***************9888 PP
7	zf-C2H2	11.8	0.00072	226	249	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ C k F++ + Lk H r+ H PKA53345.1 226 CGepGCLKFFTNAEFLKAHVRScH 249 77779****************966 PP
8	zf-C2H2	17.5	1.2e-05	282	306	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C+ +Fs+ksnL++H + H PKA53345.1 282 KCRfdGCDHTFSNKSNLNKHVKAiH 306 789999**************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MVATSEGDDK SRPIFRDIRR YYCEYCGICR SKKSLIMSHM QSHHQVELKK VAVNEVHAQK 60 QELRQKLCYA CEECDAIFKK PSYLLQHKQS HSVERLFTCP LEDCHSSYRR KDHLNRHLLK 120 HQGRIFNCPT ENCNQKFSYK GNVIKHVKNF HDDNASCEGE KKHVCQVPGC GNAFKHASQL 180 WNHKDSHGER LHVCQEPGCG KAFKYPSRLR KHEDSHVKLE CLEIICGEPG CLKFFTNAEF 240 LKAHVRSCHK YFKCEVCGSQ QLRKNFKRHQ IAHKGFLTER LKCRFDGCDH TFSNKSNLNK 300 HVKAIHKELK PFSCHMSGCG LKFTYKHVRD NHERTHIHEQ GDFLEVDSQR SRQKGGRKRQ 360 RISIEMLTRK RIVPLDQSSI LDSGTDYLRW LLSGDDQ

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MVATSEGDDK SRPIFRDIRR YYCEYCGICR SKKSLIMSHM QSHHQVELKK VAVNEVHAQK  60
QELRQKLCYA CEECDAIFKK PSYLLQHKQS HSVERLFTCP LEDCHSSYRR KDHLNRHLLK  120
HQGRIFNCPT ENCNQKFSYK GNVIKHVKNF HDDNASCEGE KKHVCQVPGC GNAFKHASQL  180
WNHKDSHGER LHVCQEPGCG KAFKYPSRLR KHEDSHVKLE CLEIICGEPG CLKFFTNAEF  240
LKAHVRSCHK YFKCEVCGSQ QLRKNFKRHQ IAHKGFLTER LKCRFDGCDH TFSNKSNLNK  300
HVKAIHKELK PFSCHMSGCG LKFTYKHVRD NHERTHIHEQ GDFLEVDSQR SRQKGGRKRQ  360
RISIEMLTRK RIVPLDQSSI LDSGTDYLRW LLSGDDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-117	C2H2 family protein