PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA53235.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family BBR-BPC
Protein Properties Length: 279aa    MW: 30625 Da    PI: 10.6242
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA53235.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind250.21.3e-766227986301
   GAGA_bind  86 lvenslasalpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180
                     s++++  ++ + l+ +k i++l+ +s     + ++ ++++++ e+ +++ pi  ++ ++++++++ k+++   +k+ + k++kk ++  ++k+  
  PKA53235.1  62 SEASSMNFSWVPQRNFLQPAKAINHLHATSAplssEMINVPSIPISTENAVQNGPIDAKPIKSRKQSSSAKKANRIATKVLRPKEPKKPPSGATRKKVG 160
                 334445566667778888888888888866566645566677789999999999999999999998888888888999999999999966555443333 PP

   GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279
                 ++  +  k+ekks++ + +g+ +D s++PvPvCsCtG++rqCY+WG+GGWqS+CCtt+iS yPLP+s  r+gaR+agrKmS ga+ klL++La eG+dl
  PKA53235.1 161 ST--SMGKREKKSQENSFDGIMIDFSGVPVPVCSCTGVPRQCYRWGTGGWQSSCCTTNISEYPLPMSLSRPGARLAGRKMSIGAYGKLLQRLAVEGHDL 257
                 33..5789******************************************************************************************* PP

   GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301
                 s +vDLk+hWA+HGtnkfvti+
  PKA53235.1 258 SYAVDLKNHWARHGTNKFVTIK 279
                 *********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MDGKGRLNTR NWEFMDHRLS ESMLKPTLGV SIPENNVSGY QASFLKIGAY SDRSTVIGEH  60
HSEASSMNFS WVPQRNFLQP AKAINHLHAT SAPLSSEMIN VPSIPISTEN AVQNGPIDAK  120
PIKSRKQSSS AKKANRIATK VLRPKEPKKP PSGATRKKVG STSMGKREKK SQENSFDGIM  180
IDFSGVPVPV CSCTGVPRQC YRWGTGGWQS SCCTTNISEY PLPMSLSRPG ARLAGRKMSI  240
GAYGKLLQRL AVEGHDLSYA VDLKNHWARH GTNKFVTIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.37e-61BBR-BPC family protein