PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA52863.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | Trihelix | ||||||||
Protein Properties | Length: 248aa MW: 27413.2 Da PI: 10.0836 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 49.9 | 8.5e-16 | 37 | 119 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ vl L+e++++++ +r+klk+++We+++ ++ ++ + ++p qCk+k+e+l+kry+ +++ ++ ++++f +++ PKA52863.1 37 EWSEDGVLSLLEVYESKWLLRNRAKLKGADWEDIAGHVsrrsSASKAFKTPSQCKNKIESLKKRYRSEAAAGSS-------SWQFFARMD 119 5*************************************77666666778*****************99887765.......599999997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MIFSSASALC NSMDSASHGH GPGESQALAP AVTKRDEWSE DGVLSLLEVY ESKWLLRNRA 60 KLKGADWEDI AGHVSRRSSA SKAFKTPSQC KNKIESLKKR YRSEAAAGSS SWQFFARMDG 120 LLKGDAAAGK GNGIKLPAPA EKAEEGDGDP DKASNTSPEV AGERKRVVKR RKGLGGEVAD 180 SISLLADSML KMEQARMDTW KEWEKIRIEM EVKKKEMELR RTEIVAHTQL EIAKLLVQIW 240 RGRNNGRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 166 | 171 | RVVKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54390.1 | 2e-34 | Trihelix family protein |