PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA52730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 21723.4 Da PI: 9.5567 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.5 | 9.1e-20 | 49 | 98 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 gy+GVr+++ +g+W+AeIrdp + r++lg+f taeeAa+a+++ +++++g PKA52730.1 49 GYRGVRRRP-WGKWAAEIRDPAK---GVRVWLGTFATAEEAAQAYDREARRIRG 98 8********.**********843...4*************************98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence |
MCGGAAIADF IPRRRGNSDN PVSASDLWPH SSLSRKLELG KRKRASKNGY RGVRRRPWGK 60 WAAEIRDPAK GVRVWLGTFA TAEEAAQAYD REARRIRGPK AKVNFPNEDP PPPAPPPPPS 120 SLSENHRQVA DGTGHGACGG TYRSCLTPFQ QTPDVDEIVP PAVAAAPAAG TEYWSGINRE 180 TPAAAAMEIL WNFDDLPLTF |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 41 | 57 | KRKRASKNGYRGVRRRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47520.1 | 2e-34 | ERF family protein |