PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA50583.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 227aa MW: 25793.7 Da PI: 5.1105 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.6 | 8.5e-20 | 83 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p + r +lg+++ta eAa+a+++a+ +++g PKA50583.1 83 CHYRGVRQRT-WGKWVAEIREP-----NrSRLWLGTYDTAVEAAAAYDEAAAAMYG 132 79*****999.**********8.....44***********************9988 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence |
MEPELEGRRR RIYYTVQATE DDERKRRTST RRRGISVAEI IAKWKDHNEK LQSNDSQITP 60 KFPGKGSRKG CMRGKGGPEN SYCHYRGVRQ RTWGKWVAEI REPNRSRLWL GTYDTAVEAA 120 AAYDEAAAAM YGACARLNFP ESELRKPSAG EKMNVKSDEL KEEPLDLEER EPDQLDVGEI 180 TGDADLHDPN GGRIAWSLEQ MDQIGYFSDL DYGLLDLGSP DGSLFFL |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 8 | 27 | RRRRIYYTVQATEDDERKRR |
2 | 9 | 28 | RRRRIYYTVQATEDDERKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40350.1 | 1e-29 | ERF family protein |