PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA50401.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 257aa MW: 28718.9 Da PI: 9.6539 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.9 | 3.5e-20 | 19 | 65 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 k+i+n+ rqv f+kRr+g++KKA+ELS+LC++++a++ fs+ gk + PKA50401.1 19 KKIKNEAARQVAFTKRRQGVIKKASELSTLCGIDIAIVAFSPAGKPF 65 68*****************************************9855 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MDNNKKKKTS RGRQKIEIKK IKNEAARQVA FTKRRQGVIK KASELSTLCG IDIAIVAFSP 60 AGKPFSFGQP SVETIINRFL SQVDTNIVFP MVPPPTESLA IELLNLQCME IELQLKAARE 120 KKAMLEDRLR MAVEAMRDML MEKVLIGQKM EELGMEEMER IRRVLEHAKW KVETKLKDVA 180 LFPSTALQLT NTSVHADPVL PARVVNNGVV NVMGARDEFL VGYSGVLESK PLMICELVAA 240 NGEMMVYPYS ITASLIG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 2e-25 | M-type_MADS family protein |