PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50131.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 626aa MW: 68974.9 Da PI: 6.3247

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50131.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	102.5	3.3e-32	457	541	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev+aLi +r+ +e r+++ lk+plWeevs++m + g++rs+k+Ckekwen+nk+++k+k++ +kr s+s +tcpyf+ql+ PKA50131.1 457 RWPKAEVQALIGVRSGLEARFQEPGLKGPLWEEVSAAMDAMGYRRSAKRCKEKWENINKYFRKTKDSGRKR-SQSMKTCPYFQQLD 541 8*******************************************************************8.89999*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence
MQSGYGGVSE IQQFMVDGAG AAHTLFSTRP HNPSAATVVT AQEIHHHHAA VQPYKFNPFH 60 HHHHHHHHQT SPAPAPHFPH FHAMPITQQL FTQPPHPHHP HHFQLFHPAL DHDPGPENSS 120 TGASPSFLAT AMSFKLAVND SDGGGGGGEE GPNDDNVGVA GSILHGDEAS QSRLRSSWHR 180 EDDCAIKEPF WRPLDLDFIN HNSKRCKDTE PEHHFVKRIR DAGEPESSHT GGAAASASSN 240 YKIFSELEAI YQPGSSLGGA IAAEEATNMN PHSRPNQTGS GSVLTGDEHN LMHPTPAAPA 300 LDPRVEDDNS TGGEAHTKTI PHAHSRRRRR RRHLQMATVA AFFEGLMKQL MDQQESLHRR 360 FLDIMECRDR ERVGREEAWR EQEAARSRRE TAARAHERAL SAARESAIIS FLEKITGETL 420 HLPAAAAAAC GADDQRVDDG DGDDSGTQNK LMIGTSRWPK AEVQALIGVR SGLEARFQEP 480 GLKGPLWEEV SAAMDAMGYR RSAKRCKEKW ENINKYFRKT KDSGRKRSQS MKTCPYFQQL 540 DQLYSSSKSL AAPPSKNSEL LDAVVVPTEN RMLISGSNRS ESLQGEEEVG ESEGQGKDPL 600 EEEDEDEDAA ETTASAEIEA FRPPPD

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence

MQSGYGGVSE IQQFMVDGAG AAHTLFSTRP HNPSAATVVT AQEIHHHHAA VQPYKFNPFH  60
HHHHHHHHQT SPAPAPHFPH FHAMPITQQL FTQPPHPHHP HHFQLFHPAL DHDPGPENSS  120
TGASPSFLAT AMSFKLAVND SDGGGGGGEE GPNDDNVGVA GSILHGDEAS QSRLRSSWHR  180
EDDCAIKEPF WRPLDLDFIN HNSKRCKDTE PEHHFVKRIR DAGEPESSHT GGAAASASSN  240
YKIFSELEAI YQPGSSLGGA IAAEEATNMN PHSRPNQTGS GSVLTGDEHN LMHPTPAAPA  300
LDPRVEDDNS TGGEAHTKTI PHAHSRRRRR RRHLQMATVA AFFEGLMKQL MDQQESLHRR  360
FLDIMECRDR ERVGREEAWR EQEAARSRRE TAARAHERAL SAARESAIIS FLEKITGETL  420
HLPAAAAAAC GADDQRVDDG DGDDSGTQNK LMIGTSRWPK AEVQALIGVR SGLEARFQEP  480
GLKGPLWEEV SAAMDAMGYR RSAKRCKEKW ENINKYFRKT KDSGRKRSQS MKTCPYFQQL  540
DQLYSSSKSL AAPPSKNSEL LDAVVVPTEN RMLISGSNRS ESLQGEEEVG ESEGQGKDPL  600
EEEDEDEDAA ETTASAEIEA FRPPPD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	326	331	RRRRRR
2	326	332	RRRRRRR
3	327	332	RRRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-40	Trihelix family protein