PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA50002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | ERF | ||||||||
Protein Properties | Length: 235aa MW: 25706.6 Da PI: 5.0608 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.2 | 3.1e-21 | 107 | 155 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp r +r +lg+f+taeeAa+a+++a+++++g PKA50002.1 107 YRGVRQRP-WGKWAAEIRDP-----RlaARKWLGTFDTAEEAARAYDRAALEFRG 155 9*******.**********9.....667*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MASPKQELHL RPFSKTLPLT APASSSAGHR PYSSEQEAAI MVSTLINVIS GERRPLTDVL 60 SRPEPCNQFG SSDDCLGCSF FEGEAAAHNA LDISGGGRRR RRKKNLYRGV RQRPWGKWAA 120 EIRDPRLAAR KWLGTFDTAE EAARAYDRAA LEFRGPRAKL NFPFPDNVSS GTGEEEDDNV 180 GEVTPTELTG EAPAGVPAAM VEGVKVQGEE NMESFWDGLQ DLVPLDGEEA ARNHQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 104 | RRRRRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 8e-26 | ERF family protein |