PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA46995.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family M-type_MADS
Protein Properties Length: 239aa    MW: 26400.6 Da    PI: 8.4892
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA46995.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.61.2e-211963145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                krie++  rqv fskRr g++KKA ELS+LC+ae+ +++fs+ gk
  PKA46995.1 19 KRIESEEARQVCFSKRRSGLFKKATELSILCGAEIGIVVFSPAGK 63
                79*****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MMTVRKKRQS IGRQKIPMKR IESEEARQVC FSKRRSGLFK KATELSILCG AEIGIVVFSP  60
AGKPFSFGHP SLDYIIKRFA GGDRIRGVGP MSTAHGIDCG SLQDLNINHA RLTEELEEQR  120
RRKEALEVAM EALRSSDHRR ALPWKADVHE MEMEELESFQ KVLEVLWGNV ASRREEIEIM  180
MMEVETRAAA AAAAAAAAAP VAYGYVGSCN GLYLTPPSLV PDLTPPSLVP AGCISRLHP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-35M-type_MADS family protein