PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA46940.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family bHLH
Protein Properties Length: 318aa    MW: 33963.1 Da    PI: 6.1741
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA46940.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.92.1e-09165209554
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 h+++Er RR+ri +++  L+el+P+       K + a++L + v+Y+k L
  PKA46940.1 165 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEIVDYVKFL 209
                 99***********************7.....5****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    
MANQPQPPPE GIADDFFEQI FSMPGYPSGD GGLAAGDGSS VPGMVTQFSS GDSGSGSFPV  60
FPLGLSLDQG RSGFAMAEEG SSGGGGGKRL REAAEGKASS EAERESVQLA SLFPAFGHVQ  120
SHQIRSNPPQ ILHGQSMQAP VAPVPQPPAP RPRVRARRGQ ATDPHSIAER LRRERIAERM  180
RALQELVPNT NKTDRAAMLD EIVDYVKFLR LQVKVLSMSR LGGAGAVAQL VADIPLAQSE  240
GDSSSDGRSK QQVWEKWSTD GTERQVAKLM EEDVGAAMQF LQSKALCMMP ISLAAAIYHT  300
QHQPDNSSVK HEPNTPPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-57bHLH family protein