PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA46873.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 320aa MW: 35527.5 Da PI: 10.8298

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA46873.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49	1.6e-15	22	110	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+ Li+a ++ +l+rg+l++++W+ev++++ r r+ +qCk++++ l+k+yk +k ++ s + s++++f++l+ PKA46873.1 22 CWSEGETSMLIDAWGDRYLELNRGNLRQKQWQEVADAVngrpgGGRRPARTDVQCKNRIDTLKKKYKIEKGKISD--SAVASQWSFFSRLD 110 7***********************************99776555567899***********99988887..688899***997 PP

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence
MEGRDAAPAR PPNPAMPYRE DCWSEGETSM LIDAWGDRYL ELNRGNLRQK QWQEVADAVN 60 GRPGGGRRPA RTDVQCKNRI DTLKKKYKIE KGKISDSAVA SQWSFFSRLD MLVGSAVPAK 120 KGPPSPPLAL PLPSHRKGLP LPAAAAAAAA AAIRPVDPPP REKRPRPAAA SLQVDDSVFR 180 RNFSAAAAAA AAAADGESGS SSRSSRSSME RSRSSRERSA RGLRRKPEGS EGDGMRELAR 240 AIERFAEIYE KVEGDKQRQI IEMEKQRMEF IKGLEFQRMQ MFVDTQVQLE KIKRTRRADA 300 GEIRTSTTIP FLIQPRMLNM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	167	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	2e-27	Trihelix family protein