PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA46683.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 26787.3 Da PI: 9.6068 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8.1e-21 | 32 | 81 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g PKA46683.1 32 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 81 58*******.**********8...557*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MAPREKGTGG GRSGGGGGVG VELGGSVGKE MHFRGVRKRP WGRYAAEIRD PGKKSRVWLG 60 TFDTAEEAAR AYDAAAREFR GPKAKTNFPC TDVSQIPIPV VEAAAAAAAA AGSPSSQSST 120 VESSSREAVS VLPPLATPLP PLDFDLFHRG APRFPFQHFP PPAAMAQPFF LFDPFVRSDK 180 AATLAATVAV AGHHRLALDR PMILREYRAP VHSGVQSDSD SSSVVDLQPP TLQSRRRCID 240 LDLNLPPPTE IA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 9 | 18 | GGGRSGGGGG |
2 | 10 | 19 | GGGRSGGGGG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 8e-24 | ERF family protein |