PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027368920.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 843aa MW: 93397.5 Da PI: 8.8444

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027368920.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.2e-07	153	175	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +Cr+fa+ G C++G+ C+F H XP_027368920.1 153 TQPCRDFAA-GKCRRGSHCHFLHH 175 789****.***********6 PP
2	zf-CCCH	19.5	1.7e-06	214	235	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++a+ G C+ G++CkF H XP_027368920.1 214 ETCINYAK-GRCRMGASCKFVHH 235 78****.***********5 PP
3	zf-CCCH	21.1	5.4e-07	276	299	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ lC++fa G C+ G C+F+H+ XP_027368920.1 276 GETLCKYFAN-GNCRNGKYCRFSHD 299 57898888.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence
MSGSGRKRST KWDLRDDPEF VLDSKQLRAG WSSADVAGGN SSKWSYLEGS DKSKPGMGFS 60 SNEPFPGGRG SNKGDIMNKD HTFLDATMEW DADENYRKKM SPGFEEWKNK RHSQSPKNGW 120 SRSVRSRSRS PPHGFRWDSG VNEKNRMRAG VSTQPCRDFA AGKCRRGSHC HFLHHDNKNH 180 EDSWENKCRE DGAPRYSAPH ESRDHSHKSG RSNETCINYA KGRCRMGASC KFVHHNNSDG 240 HGKVSMDELT REREVDRRHR DSSFEQGGGH GPNRSGETLC KYFANGNCRN GKYCRFSHDK 300 QACTSPNRRV RDDRWPGNPG GDNQMLDRPK LSDSLSPHRR LRDDRWDSDG KADADKVLDG 360 PKRTDTVAVP DTVKLVDDKS GGVGTTEPGF TAWPPRDGWG HSLDKSKVRG EPPFSSDKKE 420 GDSWIAGSTG ANKHSFHTTG TDIWLGDAKM SPDWDYRVGS SSRIEKGHEQ NKHGITQSGM 480 YLAASEHDRT QIAPGQGFNQ NAQSLNPLHS SSSQAIAQSH VAASILPSRG GIVDGMQNQQ 540 VSTEKKYIAE SNIMDAGLSQ VSSKNPPPTQ NVVGKEQLAQ LTNLTASLAH ILGTGQQLPQ 600 LYSALISHDA KGTPSLAKTE VPAMSVSNTL IKPDPAVGLP EQYDPMFDSI EQKSAVASGV 660 PPVIPSRKIA EDEVEIPSKL SNSEKQNCGD SLKAACSEEL VKSDHVIQLQ LGQNTEVNKD 720 NKEVVAEERK NSQDDHKNSP LENMDPNDGP DEAKKTKDMK GIRAFKFALV EFVKELLKPT 780 WKDGRITKED YKTIVKKVVD KVTGTMQGTH IPHTQEKIDQ YLSFSKPKLN KLVQAYVEKV 840 QKA

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence

MSGSGRKRST KWDLRDDPEF VLDSKQLRAG WSSADVAGGN SSKWSYLEGS DKSKPGMGFS  60
SNEPFPGGRG SNKGDIMNKD HTFLDATMEW DADENYRKKM SPGFEEWKNK RHSQSPKNGW  120
SRSVRSRSRS PPHGFRWDSG VNEKNRMRAG VSTQPCRDFA AGKCRRGSHC HFLHHDNKNH  180
EDSWENKCRE DGAPRYSAPH ESRDHSHKSG RSNETCINYA KGRCRMGASC KFVHHNNSDG  240
HGKVSMDELT REREVDRRHR DSSFEQGGGH GPNRSGETLC KYFANGNCRN GKYCRFSHDK  300
QACTSPNRRV RDDRWPGNPG GDNQMLDRPK LSDSLSPHRR LRDDRWDSDG KADADKVLDG  360
PKRTDTVAVP DTVKLVDDKS GGVGTTEPGF TAWPPRDGWG HSLDKSKVRG EPPFSSDKKE  420
GDSWIAGSTG ANKHSFHTTG TDIWLGDAKM SPDWDYRVGS SSRIEKGHEQ NKHGITQSGM  480
YLAASEHDRT QIAPGQGFNQ NAQSLNPLHS SSSQAIAQSH VAASILPSRG GIVDGMQNQQ  540
VSTEKKYIAE SNIMDAGLSQ VSSKNPPPTQ NVVGKEQLAQ LTNLTASLAH ILGTGQQLPQ  600
LYSALISHDA KGTPSLAKTE VPAMSVSNTL IKPDPAVGLP EQYDPMFDSI EQKSAVASGV  660
PPVIPSRKIA EDEVEIPSKL SNSEKQNCGD SLKAACSEEL VKSDHVIQLQ LGQNTEVNKD  720
NKEVVAEERK NSQDDHKNSP LENMDPNDGP DEAKKTKDMK GIRAFKFALV EFVKELLKPT  780
WKDGRITKED YKTIVKKVVD KVTGTMQGTH IPHTQEKIDQ YLSFSKPKLN KLVQAYVEKV  840
QKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-13	C3H family protein