PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027368894.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 864aa MW: 95647.1 Da PI: 8.9301

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027368894.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.8	3.3e-07	174	196	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t +Cr+fa+ G C++G+ C+F H XP_027368894.1 174 TQPCRDFAA-GKCRRGSHCHFLHH 196 789****.***********6 PP
2	zf-CCCH	19.5	1.8e-06	235	256	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++a+ G C+ G++CkF H XP_027368894.1 235 ETCINYAK-GRCRMGASCKFVHH 256 78****.***********5 PP
3	zf-CCCH	21.1	5.5e-07	297	320	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ lC++fa G C+ G C+F+H+ XP_027368894.1 297 GETLCKYFAN-GNCRNGKYCRFSHD 320 57898888.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 864 aa Download sequence
MSTLSTLHYS KGRSVTVLAS EMSGSGRKRS TKWDLRDDPE FVLDSKQLRA GWSSADVAGG 60 NSSKWSYLEG SDKSKPGMGF SSNEPFPGGR GSNKGDIMNK DHTFLDATME WDADENYRKK 120 MSPGFEEWKN KRHSQSPKNG WSRSVRSRSR SPPHGFRWDS GVNEKNRMRA GVSTQPCRDF 180 AAGKCRRGSH CHFLHHDNKN HEDSWENKCR EDGAPRYSAP HESRDHSHKS GRSNETCINY 240 AKGRCRMGAS CKFVHHNNSD GHGKVSMDEL TREREVDRRH RDSSFEQGGG HGPNRSGETL 300 CKYFANGNCR NGKYCRFSHD KQACTSPNRR VRDDRWPGNP GGDNQMLDRP KLSDSLSPHR 360 RLRDDRWDSD GKADADKVLD GPKRTDTVAV PDTVKLVDDK SGGVGTTEPG FTAWPPRDGW 420 GHSLDKSKVR GEPPFSSDKK EGDSWIAGST GANKHSFHTT GTDIWLGDAK MSPDWDYRVG 480 SSSRIEKGHE QNKHGITQSG MYLAASEHDR TQIAPGQGFN QNAQSLNPLH SSSSQAIAQS 540 HVAASILPSR GGIVDGMQNQ QVSTEKKYIA ESNIMDAGLS QVSSKNPPPT QNVVGKEQLA 600 QLTNLTASLA HILGTGQQLP QLYSALISHD AKGTPSLAKT EVPAMSVSNT LIKPDPAVGL 660 PEQYDPMFDS IEQKSAVASG VPPVIPSRKI AEDEVEIPSK LSNSEKQNCG DSLKAACSEE 720 LVKSDHVIQL QLGQNTEVNK DNKEVVAEER KNSQDDHKNS PLENMDPNDG PDEAKKTKDM 780 KGIRAFKFAL VEFVKELLKP TWKDGRITKE DYKTIVKKVV DKVTGTMQGT HIPHTQEKID 840 QYLSFSKPKL NKLVQAYVEK VQKA

Sequence ? help Back to Top

Protein Sequence Length: 864 aa Download sequence

MSTLSTLHYS KGRSVTVLAS EMSGSGRKRS TKWDLRDDPE FVLDSKQLRA GWSSADVAGG  60
NSSKWSYLEG SDKSKPGMGF SSNEPFPGGR GSNKGDIMNK DHTFLDATME WDADENYRKK  120
MSPGFEEWKN KRHSQSPKNG WSRSVRSRSR SPPHGFRWDS GVNEKNRMRA GVSTQPCRDF  180
AAGKCRRGSH CHFLHHDNKN HEDSWENKCR EDGAPRYSAP HESRDHSHKS GRSNETCINY  240
AKGRCRMGAS CKFVHHNNSD GHGKVSMDEL TREREVDRRH RDSSFEQGGG HGPNRSGETL  300
CKYFANGNCR NGKYCRFSHD KQACTSPNRR VRDDRWPGNP GGDNQMLDRP KLSDSLSPHR  360
RLRDDRWDSD GKADADKVLD GPKRTDTVAV PDTVKLVDDK SGGVGTTEPG FTAWPPRDGW  420
GHSLDKSKVR GEPPFSSDKK EGDSWIAGST GANKHSFHTT GTDIWLGDAK MSPDWDYRVG  480
SSSRIEKGHE QNKHGITQSG MYLAASEHDR TQIAPGQGFN QNAQSLNPLH SSSSQAIAQS  540
HVAASILPSR GGIVDGMQNQ QVSTEKKYIA ESNIMDAGLS QVSSKNPPPT QNVVGKEQLA  600
QLTNLTASLA HILGTGQQLP QLYSALISHD AKGTPSLAKT EVPAMSVSNT LIKPDPAVGL  660
PEQYDPMFDS IEQKSAVASG VPPVIPSRKI AEDEVEIPSK LSNSEKQNCG DSLKAACSEE  720
LVKSDHVIQL QLGQNTEVNK DNKEVVAEER KNSQDDHKNS PLENMDPNDG PDEAKKTKDM  780
KGIRAFKFAL VEFVKELLKP TWKDGRITKE DYKTIVKKVV DKVTGTMQGT HIPHTQEKID  840
QYLSFSKPKL NKLVQAYVEK VQKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-13	C3H family protein