PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027367772.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 156aa MW: 18289.3 Da PI: 9.9705 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43 | 5.6e-14 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i ++ r+ tf kR++gi+KK +EL +LC+++++ +i s+ XP_027367772.1 11 ITDDATRKATFKKRKKGIIKKVNELTILCGIQACALIPSP 50 789999****************************999886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence |
MTRKKVKLAY ITDDATRKAT FKKRKKGIIK KVNELTILCG IQACALIPSP FDSKTEVWPD 60 PEGAKNVIER YQNTPMIDER KNVNQERFVM QWVAKTQDQL KKKRQENREK EMTLSMFQYM 120 HGETLPQHFT VEELKCLDNV IDKNMKEIEN KIAALT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVKLAYITDDATRKATFKKRK |
2 | 22 | 26 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-33 | M-type_MADS family protein |