PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027367370.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 358aa MW: 39406.7 Da PI: 7.8996

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027367370.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.5	2.9e-15	275	300	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg XP_027367370.1 275 FKTELCNKWQETGTCPYGDHCQFAHG 300 79***********************8 PP
2	zf-CCCH	18.3	4.1e-06	313	337	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H XP_027367370.1 313 YKTEVCRMVLA-GvVCPYGHRCHFRH 337 9********.66********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence
MHNKDACSPS SNGGFGATAA SQMPSNGNAY SSLYAALSNE NIPSFSANCS NGGGVSLYPY 60 SDSTQYDSCV IQKHQDMVNR HSMCLSRLVE TSKEVEALRQ ENGQLRAVNK ELQKQLNLLI 120 QASLENQFGG GGGSSGQTQT TPFDVVHGFR GFHIGEGKEN CADWNHNNNN NNNSNNSNNN 180 KELQEISDES PTSVIENNGV ELERFSLPKS ISVRSNGYLK MAQSAALASN NASRNKGATR 240 PRTSSAPPEA QKVYVRGGQK EEEPLEMVVY NQGMFKTELC NKWQETGTCP YGDHCQFAHG 300 IGELRPVIRH PRYKTEVCRM VLAGVVCPYG HRCHFRHALT EQEKAVSQPK PRTMKLER

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence

MHNKDACSPS SNGGFGATAA SQMPSNGNAY SSLYAALSNE NIPSFSANCS NGGGVSLYPY  60
SDSTQYDSCV IQKHQDMVNR HSMCLSRLVE TSKEVEALRQ ENGQLRAVNK ELQKQLNLLI  120
QASLENQFGG GGGSSGQTQT TPFDVVHGFR GFHIGEGKEN CADWNHNNNN NNNSNNSNNN  180
KELQEISDES PTSVIENNGV ELERFSLPKS ISVRSNGYLK MAQSAALASN NASRNKGATR  240
PRTSSAPPEA QKVYVRGGQK EEEPLEMVVY NQGMFKTELC NKWQETGTCP YGDHCQFAHG  300
IGELRPVIRH PRYKTEVCRM VLAGVVCPYG HRCHFRHALT EQEKAVSQPK PRTMKLER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	4e-85	C3H family protein