PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027353748.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

NF-YC

Protein Properties

Length: 265aa MW: 29074.9 Da PI: 4.8443

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027353748.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	40.5	6.1e-13	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ +fdfl d+v r XP_027353748.1 1 MQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDVVSR 69 899***************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MQADEDVGKI ALAVPVLVSK ALELFLQDLC DRTYEITLQR GAKTMNSLHL KHCVQSYSVF 60 DFLRDVVSRV PDYGHGHGHA EGGADDRPIS KRRKAVGDDC NDSDEEAKRS KMHELNHTGS 120 TGRGRGRGRG RGRGRGSRNV IREACHQDAE AEPCTSVQQG SQLNTNTSVA IHNGPELKEN 180 VAVSVVSTEP LRNIDLNTNT NENDDKKAST PANAPLPEPP TEGKHEEIPG WSLSDVDKVA 240 IDSMQLAQIG RQLEEDEEDY DEEEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	132	RGRGRGRGRG
2	123	133	RGRGRGRGRGR
3	125	134	RGRGRGRGRG
4	125	135	RGRGRGRGRGR
5	127	136	RGRGRGRGRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	6e-55	NF-YC family protein