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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_027353747.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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| Family | NF-YC | ||||||||
| Protein Properties | Length: 282aa MW: 31129.5 Da PI: 5.6236 | ||||||||
| Description | NF-YC family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | NF-YC | 61.3 | 1.9e-19 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + + +t++ ++ +v++ +fdfl d+v r
XP_027353747.1 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYSVFDFLRDVVSR 86
5789**************************************************************************987 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 282 aa Download sequence |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK 60 TMNSLHLKHC VQSYSVFDFL RDVVSRVPDY GHGHGHAEGG ADDRPISKRR KAVGDDCNDS 120 DEEAKRSKMH ELNHTGSTGR GRGRGRGRGR GRGSRNVIRE ACHQDAEAEP CTSVQQGSQL 180 NTNTSVAIHN GPELKENVAV SVVSTEPLRN IDLNTNTNEN DDKKASTPAN APLPEPPTEG 240 KHEEIPGWSL SDVDKVAIDS MQLAQIGRQL EEDEEDYDEE EG |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 140 | 149 | RGRGRGRGRG |
| 2 | 140 | 150 | RGRGRGRGRGR |
| 3 | 142 | 151 | RGRGRGRGRG |
| 4 | 142 | 152 | RGRGRGRGRGR |
| 5 | 144 | 153 | RGRGRGRGRG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G12480.1 | 3e-68 | NF-YC family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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