PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027350690.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 734aa MW: 80027.7 Da PI: 6.2389

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027350690.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.2	2.4e-07	305	325	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_027350690.1 305 PCPDFRK-GACRRGDMCEYAHG 325 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MCCELGRLKP APTPLLLPIF VRTSEPGSHK MNHFSVDTED SFVSLLELAA NNDSEGFKRL 60 IECDPSSIDE VGLWYGRRKG SKQMVNEQRT PLMVAATYGS IDIMKLILSL SDADINRPCG 120 LDKSTALHCA ASGGAENAVD AVKLLLEAGA DPNSVDANGH RPIDVIVFPP KLEHVKNSLE 180 ELLQTDDSIA GCNLRVITTS SNAYSPPLST SPENESPSAP DFQLKLKSND IPVWSASEKK 240 EYPVDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH 300 YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTNCSRR VCFFAHTAEE 360 LRPLYVSTGS AVPSPRSSTS SAMDFAAAMN MLPGSPSSMS VISPSPFTPP MSPSANGISH 420 SSVAWPQPNI PALHLPGSNL QSSRLRSSLN ARDIPVDDFD LLQDYDQQQQ LLNELSCLSP 480 QPMNSNTINR SGRMKPLTPS NLDDLFSAES SSPRYADPTL ASTVFSPTHK SAVLNQFQQQ 540 QSLLSPVNTN FSSKNVEHSL LQASFGVQTS GRMSPRNVEP ISPMGSRISM LAQREKQQHF 600 RSLSSRELGS NSAAAAAAAA AAAASVNSWS KWGSPNGKLD WAVGADEVGK LRRSSSFELG 660 NNGEEPDLSW VQSLVKESPT EIKEKLATTV SNVAAAGSSG EGSNMSTQME SVDHAVLGAW 720 LEQMQLDHLV AQQN

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MCCELGRLKP APTPLLLPIF VRTSEPGSHK MNHFSVDTED SFVSLLELAA NNDSEGFKRL  60
IECDPSSIDE VGLWYGRRKG SKQMVNEQRT PLMVAATYGS IDIMKLILSL SDADINRPCG  120
LDKSTALHCA ASGGAENAVD AVKLLLEAGA DPNSVDANGH RPIDVIVFPP KLEHVKNSLE  180
ELLQTDDSIA GCNLRVITTS SNAYSPPLST SPENESPSAP DFQLKLKSND IPVWSASEKK  240
EYPVDPSLPD IKNSIYSTDE FRMYSFKVRP CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH  300
YSCVPCPDFR KGACRRGDMC EYAHGVFECW LHPAQYRTRL CKDGTNCSRR VCFFAHTAEE  360
LRPLYVSTGS AVPSPRSSTS SAMDFAAAMN MLPGSPSSMS VISPSPFTPP MSPSANGISH  420
SSVAWPQPNI PALHLPGSNL QSSRLRSSLN ARDIPVDDFD LLQDYDQQQQ LLNELSCLSP  480
QPMNSNTINR SGRMKPLTPS NLDDLFSAES SSPRYADPTL ASTVFSPTHK SAVLNQFQQQ  540
QSLLSPVNTN FSSKNVEHSL LQASFGVQTS GRMSPRNVEP ISPMGSRISM LAQREKQQHF  600
RSLSSRELGS NSAAAAAAAA AAAASVNSWS KWGSPNGKLD WAVGADEVGK LRRSSSFELG  660
NNGEEPDLSW VQSLVKESPT EIKEKLATTV SNVAAAGSSG EGSNMSTQME SVDHAVLGAW  720
LEQMQLDHLV AQQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	76	83	GRRKGSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein