PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027341387.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 857aa MW: 96789.9 Da PI: 8.8716

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027341387.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.7	1.7e-07	149	169	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Cr+fa+ G C++G++C+F H XP_027341387.1 149 PCRDFAA-GKCRRGSQCHFLHH 169 8****.***********6 PP
2	zf-CCCH	18.2	4.6e-06	208	229	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++a+ G C+ G++Ck+ H XP_027341387.1 208 ETCINYAK-GRCRMGASCKYVHH 229 78****.***********6 PP
3	zf-CCCH	19.3	2e-06	273	293	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f+++G C+ G rC+F+H+ XP_027341387.1 273 PCK-FFAFGNCRNGKRCRFSHD 293 799.8888*************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence
MSGNGRKHSS KWDSRDQHEF APDSVASSNS SKWSYLERND KLKSRMGFSF KEPFPEGRGS 60 NKDDITSKDY RALDATSAQD TDRSYSMEMS PGLEDWKSKK YSQSPRNGCS QSVRNARSRS 120 RSRSPSRGFR WDSGVNDRCR MRAGGLAQPC RDFAAGKCRR GSQCHFLHHD DQNYDDNWES 180 RHRKDGTPRY STLHESGDYS RTSGRSKETC INYAKGRCRM GASCKYVHHD NSDQFSKFSV 240 DEATREREID RRRTENTLEQ GGRHGPNHNG DIPCKFFAFG NCRNGKRCRF SHDRQASRSP 300 NRILNDDRSR SNQGEDQALD RPKLSDKVSP NGRLRDDRWG LDGSMADRDE VWDGSKQNDL 360 VVVPDLVKLV KDNKTGIMGT PEPGFMAWPI IDGWDHSLDK NRVHGGSPFS SDKKEEANCW 420 TAKNDSANIH SSQSVAADIW PGNEKMSPDW NYGVGSSSHT KEEHGKSKQQ VAPGQGFNQN 480 VNTLHSSSCH AVGQSQVAVS IVPPRLGTVE VMQNQEVSTE KKYMVEPNIM DANLSQVGSR 540 NPPTQNMVSK EQLTHLTSLS ASLAHILGTG RQLPQLYVTS ISQDAKDTPF LSKTEGFGKP 600 ASITFIKPDP AVELQKQCDP MCDSMEPNKA NVNGVPTTLS PSKKVPSLLP KVGQHFDDSK 660 TAFSEEQLVK SEHSIQLQKV ENIEVNKENN EVVAEEKQSS RIENKITEEN GPLENMDQNS 720 GPDDEAKKIK DVKGIRAFKF SLVEFVKELL KPTWKEGQIT KEDYKAIVKK VTDKVTGTVQ 780 RVHIPQTQEK IDRYLSFSKP KLNKLIQLSY NHSPFGCRHM WKRFRRLSAS IEIWLCNLLT 840 KFCQVCFLCV FCFFYAQ

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence

MSGNGRKHSS KWDSRDQHEF APDSVASSNS SKWSYLERND KLKSRMGFSF KEPFPEGRGS  60
NKDDITSKDY RALDATSAQD TDRSYSMEMS PGLEDWKSKK YSQSPRNGCS QSVRNARSRS  120
RSRSPSRGFR WDSGVNDRCR MRAGGLAQPC RDFAAGKCRR GSQCHFLHHD DQNYDDNWES  180
RHRKDGTPRY STLHESGDYS RTSGRSKETC INYAKGRCRM GASCKYVHHD NSDQFSKFSV  240
DEATREREID RRRTENTLEQ GGRHGPNHNG DIPCKFFAFG NCRNGKRCRF SHDRQASRSP  300
NRILNDDRSR SNQGEDQALD RPKLSDKVSP NGRLRDDRWG LDGSMADRDE VWDGSKQNDL  360
VVVPDLVKLV KDNKTGIMGT PEPGFMAWPI IDGWDHSLDK NRVHGGSPFS SDKKEEANCW  420
TAKNDSANIH SSQSVAADIW PGNEKMSPDW NYGVGSSSHT KEEHGKSKQQ VAPGQGFNQN  480
VNTLHSSSCH AVGQSQVAVS IVPPRLGTVE VMQNQEVSTE KKYMVEPNIM DANLSQVGSR  540
NPPTQNMVSK EQLTHLTSLS ASLAHILGTG RQLPQLYVTS ISQDAKDTPF LSKTEGFGKP  600
ASITFIKPDP AVELQKQCDP MCDSMEPNKA NVNGVPTTLS PSKKVPSLLP KVGQHFDDSK  660
TAFSEEQLVK SEHSIQLQKV ENIEVNKENN EVVAEEKQSS RIENKITEEN GPLENMDQNS  720
GPDDEAKKIK DVKGIRAFKF SLVEFVKELL KPTWKEGQIT KEDYKAIVKK VTDKVTGTVQ  780
RVHIPQTQEK IDRYLSFSKP KLNKLIQLSY NHSPFGCRHM WKRFRRLSAS IEIWLCNLLT  840
KFCQVCFLCV FCFFYAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-10	C3H family protein