PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027337505.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27619.6 Da PI: 6.5282 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.5 | 5.5e-16 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s+r+ t+ kR+ng++KK E+S+LC++e++ ii+ ++ XP_027337505.1 11 IANDSKRKATLKKRKNGLIKKIDEISTLCGIEACAIIYTPN 51 89************************************987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MTRKKVDLSY IANDSKRKAT LKKRKNGLIK KIDEISTLCG IEACAIIYTP NDPQPEVWPS 60 EWEVHRVLSK FKRVPELEQS KKMLNQESFL RQRIIKAQEQ LKKQKSENRK KEMTQLMFEY 120 LTAGKIFDNA SMMDLNDLSC LIDQNLKEIE RNINGQVQEV APMIENAGEI MNVGEAMNVG 180 ETMNGGEQAV HMNHVQGLET NVDAMHKQNW AMDFINGGGS GSDMLPFGDV NAQNGFWANP 240 YIP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVDLSYIANDSKRKATLKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 8e-52 | M-type_MADS family protein |