PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027335074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 215aa MW: 23862.2 Da PI: 8.1628 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 247.4 | 2.8e-76 | 12 | 179 | 2 | 170 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesast 94 ++ s s+q+Cyv+CnfC+t+lavsvP tslfk+vtvrCGhCt+llsvn++ a + hl++s+ + llee +++ + +++++ + +++ XP_027335074.1 12 QHLSPSDQLCYVHCNFCDTVLAVSVPCTSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGHSFFTPqnLLEEIRNAPS-TNMMMNQLPNPND 105 67899*****************************************99999999889999999998766335555555443.3444444444444 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 v s ++ + ee+p++p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl XP_027335074.1 106 LVMS-TM-RGGPEETPKPPSANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 179 4444.43.6778999***********************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence |
MSASSTSFSP DQHLSPSDQL CYVHCNFCDT VLAVSVPCTS LFKTVTVRCG HCTNLLSVNM 60 RGLLLPAANQ LHLGHSFFTP QNLLEEIRNA PSTNMMMNQL PNPNDLVMST MRGGPEETPK 120 PPSANRPPEK RQRVPSAYNR FIKDEIQRIK AGNPDISHRE AFSAAAKNWA HFPHIHFGLM 180 PDHQPVKKAN VRQEAEDVLM KDGFFAPANV GVSPY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-100 | YABBY family protein |