PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027331570.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 702aa MW: 76212.9 Da PI: 6.554

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027331570.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	273	293	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_027331570.1 273 PCPEFRK-GSCSKGDACEYAHG 293 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 702 aa Download sequence
MCGVSKRKPS QTGLVMEGEY GKEELHHKIS ALLEFSAADD VIGFKDAVEK KGCDVDEVGL 60 WYGRRVGSKK IGYEERTPLM IAAMFGSLGV SNYILETGHV DVNRASGSDG ATALHCAVAG 120 GSAASVEVAK LLLDASADAS AVDANGNRPL DLIVSVANSM FTPRTRMVQA LLEGTGGADQ 180 ACLALPEVID RIEEQRQYIS TPRVSEKKDY PVDLSLPDIK NGIYSTDEFR MYSFKVKPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFRKG SCSKGDACEY AHGIFECWLH 300 PAQYRTRLCK DESGCTRRVC FFAHKPEELR PLYASTGSAI PSPRSYSASA SVLEMGSVSP 360 IALGSPSVLI PPSSTPPLTP SGASSPVAGA MWSQCNVSVP TLQLPKSRLK SASTARDIDL 420 DMEMLGRETH RRRQQLMMDE ISGVSSPSNW KNSMPNSPSF SVSLGDHSGE LNRLSGVKPT 480 NLEDIFGSLD PSMLQKFHGI SLDVAGSQLQ SPTGIQMRQS VNQQLGSYSS GLSTSNVIGS 540 RSFRIDPSGD AATVALNPRA AAFAKRSQSF IERSVVNHHS ELPSPATSVA AKPSTFSDWG 600 SPDGKLDWTI NGEELNKLRK CASFGFRNGN SPLTMAKTKV PANVDEPDVS WVHSLVKDAP 660 LESGEYGVED QQKQLQCHLN NGTDAIPAWL EQMYIEQEQM VA

Sequence ? help Back to Top

Protein Sequence Length: 702 aa Download sequence

MCGVSKRKPS QTGLVMEGEY GKEELHHKIS ALLEFSAADD VIGFKDAVEK KGCDVDEVGL  60
WYGRRVGSKK IGYEERTPLM IAAMFGSLGV SNYILETGHV DVNRASGSDG ATALHCAVAG  120
GSAASVEVAK LLLDASADAS AVDANGNRPL DLIVSVANSM FTPRTRMVQA LLEGTGGADQ  180
ACLALPEVID RIEEQRQYIS TPRVSEKKDY PVDLSLPDIK NGIYSTDEFR MYSFKVKPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPEFRKG SCSKGDACEY AHGIFECWLH  300
PAQYRTRLCK DESGCTRRVC FFAHKPEELR PLYASTGSAI PSPRSYSASA SVLEMGSVSP  360
IALGSPSVLI PPSSTPPLTP SGASSPVAGA MWSQCNVSVP TLQLPKSRLK SASTARDIDL  420
DMEMLGRETH RRRQQLMMDE ISGVSSPSNW KNSMPNSPSF SVSLGDHSGE LNRLSGVKPT  480
NLEDIFGSLD PSMLQKFHGI SLDVAGSQLQ SPTGIQMRQS VNQQLGSYSS GLSTSNVIGS  540
RSFRIDPSGD AATVALNPRA AAFAKRSQSF IERSVVNHHS ELPSPATSVA AKPSTFSDWG  600
SPDGKLDWTI NGEELNKLRK CASFGFRNGN SPLTMAKTKV PANVDEPDVS WVHSLVKDAP  660
LESGEYGVED QQKQLQCHLN NGTDAIPAWL EQMYIEQEQM VA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein