PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027331568.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 729aa MW: 79037.1 Da PI: 6.2414

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027331568.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22	2.8e-07	300	320	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_027331568.1 300 PCPEFRK-GSCSKGDACEYAHG 320 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence
MFGAIGFEPV LSCDFSDSIE ALGVHISMCG VSKRKPSQTG LVMEGEYGKE ELHHKISALL 60 EFSAADDVIG FKDAVEKKGC DVDEVGLWYG RRVGSKKIGY EERTPLMIAA MFGSLGVSNY 120 ILETGHVDVN RASGSDGATA LHCAVAGGSA ASVEVAKLLL DASADASAVD ANGNRPLDLI 180 VSVANSMFTP RTRMVQALLE GTGGADQACL ALPEVIDRIE EQRQYISTPR VSEKKDYPVD 240 LSLPDIKNGI YSTDEFRMYS FKVKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP 300 CPEFRKGSCS KGDACEYAHG IFECWLHPAQ YRTRLCKDES GCTRRVCFFA HKPEELRPLY 360 ASTGSAIPSP RSYSASASVL EMGSVSPIAL GSPSVLIPPS STPPLTPSGA SSPVAGAMWS 420 QCNVSVPTLQ LPKSRLKSAS TARDIDLDME MLGRETHRRR QQLMMDEISG VSSPSNWKNS 480 MPNSPSFSVS LGDHSGELNR LSGVKPTNLE DIFGSLDPSM LQKFHGISLD VAGSQLQSPT 540 GIQMRQSVNQ QLGSYSSGLS TSNVIGSRSF RIDPSGDAAT VALNPRAAAF AKRSQSFIER 600 SVVNHHSELP SPATSVAAKP STFSDWGSPD GKLDWTINGE ELNKLRKCAS FGFRNGNSPL 660 TMAKTKVPAN VDEPDVSWVH SLVKDAPLES GEYGVEDQQK QLQCHLNNGT DAIPAWLEQM 720 YIEQEQMVA

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence

MFGAIGFEPV LSCDFSDSIE ALGVHISMCG VSKRKPSQTG LVMEGEYGKE ELHHKISALL  60
EFSAADDVIG FKDAVEKKGC DVDEVGLWYG RRVGSKKIGY EERTPLMIAA MFGSLGVSNY  120
ILETGHVDVN RASGSDGATA LHCAVAGGSA ASVEVAKLLL DASADASAVD ANGNRPLDLI  180
VSVANSMFTP RTRMVQALLE GTGGADQACL ALPEVIDRIE EQRQYISTPR VSEKKDYPVD  240
LSLPDIKNGI YSTDEFRMYS FKVKPCSRAY SHDWTECPFV HPGENARRRD PRKYHYSCVP  300
CPEFRKGSCS KGDACEYAHG IFECWLHPAQ YRTRLCKDES GCTRRVCFFA HKPEELRPLY  360
ASTGSAIPSP RSYSASASVL EMGSVSPIAL GSPSVLIPPS STPPLTPSGA SSPVAGAMWS  420
QCNVSVPTLQ LPKSRLKSAS TARDIDLDME MLGRETHRRR QQLMMDEISG VSSPSNWKNS  480
MPNSPSFSVS LGDHSGELNR LSGVKPTNLE DIFGSLDPSM LQKFHGISLD VAGSQLQSPT  540
GIQMRQSVNQ QLGSYSSGLS TSNVIGSRSF RIDPSGDAAT VALNPRAAAF AKRSQSFIER  600
SVVNHHSELP SPATSVAAKP STFSDWGSPD GKLDWTINGE ELNKLRKCAS FGFRNGNSPL  660
TMAKTKVPAN VDEPDVSWVH SLVKDAPLES GEYGVEDQQK QLQCHLNNGT DAIPAWLEQM  720
YIEQEQMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein