PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027331522.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 654aa MW: 78456.1 Da PI: 7.2832

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027331522.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.6	1.9e-07	193	212	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H XP_027331522.1 193 CPFHLKTGACRFGLRCSRVH 212 ******************99 PP
2	zf-CCCH	29.9	9.8e-10	362	389	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++G tC++G C+F+H+ XP_027331522.1 362 WKVAICGEYMKSGfkTCSRGTACNFIHC 389 899************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 654 aa Download sequence
MEEKWGEGTR MSINRKEKRK AMKKMKRKQL RKEAAERERR EEEERLNDPG EQRRLQLLEQ 60 EEAERMERDR IQFEERERAW MEMIDQQQLQ QQQQSHSNER EDQIDDDEYE YVEEEGPPQI 120 IWQGNEIILK KKQIRVRVRD RDRDKDKDKD EYEDEYRPTS NPFPPESPAQ AQMLENVAQQ 180 VPNFGTEQDK AHCPFHLKTG ACRFGLRCSR VHFYPDKSCT LLMKNMYNGP GLSWEQDEGL 240 ELLHLILVLV KGVCSIQFFD LIITRESLQH SFWWRLMVLV LYTDEEVERC FEEFYEDVHT 300 EFLKFGEIVN FKVCKNGSFH LRGNVYVQYK LLDSALLAYN SVNGRYFAGK QVSCQFVNLT 360 RWKVAICGEY MKSGFKTCSR GTACNFIHCF PNPGGDYEWA DSDKPPPRYW VKKMVALFGY 420 SDDYETLKEQ GNLSLPKNTS KTDSDRYHSR RLRSREMDQL NCGRSGRRKQ EDKKTRRTPD 480 EEWNANFDFD GERLEKEENR EKHHELTRNS SFNRNKDDNG RSYEEDSDVD WDTRENEKQH 540 GREGKNSRKW KRDSRDWIYE VESDGERDRK RHHIGKRKSS RHQSGNDSDS DNNLLDREME 600 RQHGYCRKSL RHRRSGLQDD YKYLENENEK VDGGWSQRQS DKREHRHKKK RSRG

Sequence ? help Back to Top

Protein Sequence Length: 654 aa Download sequence

MEEKWGEGTR MSINRKEKRK AMKKMKRKQL RKEAAERERR EEEERLNDPG EQRRLQLLEQ  60
EEAERMERDR IQFEERERAW MEMIDQQQLQ QQQQSHSNER EDQIDDDEYE YVEEEGPPQI  120
IWQGNEIILK KKQIRVRVRD RDRDKDKDKD EYEDEYRPTS NPFPPESPAQ AQMLENVAQQ  180
VPNFGTEQDK AHCPFHLKTG ACRFGLRCSR VHFYPDKSCT LLMKNMYNGP GLSWEQDEGL  240
ELLHLILVLV KGVCSIQFFD LIITRESLQH SFWWRLMVLV LYTDEEVERC FEEFYEDVHT  300
EFLKFGEIVN FKVCKNGSFH LRGNVYVQYK LLDSALLAYN SVNGRYFAGK QVSCQFVNLT  360
RWKVAICGEY MKSGFKTCSR GTACNFIHCF PNPGGDYEWA DSDKPPPRYW VKKMVALFGY  420
SDDYETLKEQ GNLSLPKNTS KTDSDRYHSR RLRSREMDQL NCGRSGRRKQ EDKKTRRTPD  480
EEWNANFDFD GERLEKEENR EKHHELTRNS SFNRNKDDNG RSYEEDSDVD WDTRENEKQH  540
GREGKNSRKW KRDSRDWIYE VESDGERDRK RHHIGKRKSS RHQSGNDSDS DNNLLDREME  600
RQHGYCRKSL RHRRSGLQDD YKYLENENEK VDGGWSQRQS DKREHRHKKK RSRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-133	C3H family protein