PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027329965.1

Organism

Abrus precatorius

Taxonomic ID

3816

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Abreae; Abrus

Family

C3H

Protein Properties

Length: 349aa MW: 38780.2 Da PI: 7.6972

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027329965.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.1	3.5e-09	87	111	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C f+ G C+ G++C+FaHg XP_027329965.1 87 FKTRICAKFRL-GACRNGENCNFAHG 111 69*******.***********9 PP
2	zf-CCCH	25.6	2.2e-08	149	171	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++lC+ f+ + C+yGd+C+F H XP_027329965.1 149 MKLCKKFYNGEDCPYGDNCSFLH 171 689****66********** PP
3	zf-CCCH	43	7.7e-14	230	256	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC + tG C++Gd C+FaHg+ XP_027329965.1 230 WKTKLCIKWETTGNCPFGDDCHFAHGQ 256 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MSFSDHIPSF MMSPPSFATN TDAIEVRLQF PMNNETLEPH SPHDQPPSFK RARTCDINHS 60 NGMACPPRIN QHPQNNTANK GTSHIFFKTR ICAKFRLGAC RNGENCNFAH GVEDMRQPPP 120 NWQELVGLRN EERPSSGNWD DDQKIIHRMK LCKKFYNGED CPYGDNCSFL HEDPAKFRDD 180 SGRFRESTAI SIGTNGSPKS YGDGCDNLDS NRAVNTGLNV SRGNVKSTYW KTKLCIKWET 240 TGNCPFGDDC HFAHGQAELQ VPAGRIEAET AGGAASSVKA TVPSVPRATS VSANDAPPSY 300 RASVPPANEE EQGKKHLLKW KGPKKINRIY GDWLDDLPLA HNLPSRVEI

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MSFSDHIPSF MMSPPSFATN TDAIEVRLQF PMNNETLEPH SPHDQPPSFK RARTCDINHS  60
NGMACPPRIN QHPQNNTANK GTSHIFFKTR ICAKFRLGAC RNGENCNFAH GVEDMRQPPP  120
NWQELVGLRN EERPSSGNWD DDQKIIHRMK LCKKFYNGED CPYGDNCSFL HEDPAKFRDD  180
SGRFRESTAI SIGTNGSPKS YGDGCDNLDS NRAVNTGLNV SRGNVKSTYW KTKLCIKWET  240
TGNCPFGDDC HFAHGQAELQ VPAGRIEAET AGGAASSVKA TVPSVPRATS VSANDAPPSY  300
RASVPPANEE EQGKKHLLKW KGPKKINRIY GDWLDDLPLA HNLPSRVEI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	5e-89	C3H family protein