PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_09.76 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 229aa MW: 25680.9 Da PI: 8.959 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.3 | 3.6e-17 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i n+ r t+ kRr g+lKK +ELSvLCd+ ++v++++++ evm.model.AsparagusV1_09.76 11 IANDATRRATLKKRRRGLLKKVSELSVLCDVPACVVVYGPDE 52 88999**********************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence |
MARKKVTLAW IANDATRRAT LKKRRRGLLK KVSELSVLCD VPACVVVYGP DEAQPEVWPN 60 DAQAREVLVQ YKSMPESEQC KKRVDQSGYL NQQLFKIQEQ VRKQQRENWE LEMNIKLHEA 120 IAGKCNLMDV GVEDAAVLAR LIEEKMKTVK EKMAAVAATA AAATGEGKGE MLMDYDFGGR 180 SRCQPPAPAA VPPLRRVLGS IWELGVRGWI RDFIQFSLII MEDFSGYI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVTLAWIANDATRRATLKKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-28 | M-type_MADS family protein |