PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_09.510

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

FAR1

Protein Properties

Length: 469aa MW: 52141.1 Da PI: 6.4109

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_09.510	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.3	1.8e-11	138	201	2	71
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71 fY++YA++vGF ++++s+ + +nge+ + + C k+gk +e ++ ++r++ +t+C+a++k++ evm.model.AsparagusV1_09.510 138 FYKQYAQSVGFAATVRRSSFK-ENGECLHLILACCKWGKGREGEEY-----QSRPTAKTNCQASIKLRHA 201 9*********999988776.8999***********98877.....99**********99865 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MSRKFTNENI RSPTYNILGV AEFSENAGDD FAKWEEEEGE RGRGSLKMAP MVMADNTVAE 60 EPSTGVKEVD GNKEMGIAND FVEGRLPADK DGDGNTEETS DNVKDGNGLN GDQNLNVGDD 120 KTPQLGMVFK SYGEACYFYK QYAQSVGFAA TVRRSSFKEN GECLHLILAC CKWGKGREGE 180 EYQSRPTAKT NCQASIKLRH ALAVLKFQQV YEIPSHYILS RWQKDYKRLH LLEQSCDDVA 240 SKNLMEKYDY LSMRCLQLLE VGLISNDKYQ LALKLIREVE KQLLDDSLQG DGNQKNREDL 300 ATLQFGFSQN EQVHDSSQQV KRRGRPPKKR KEAEAEAITR SNTGMGSSMT ALVGDHRDVL 360 QVGPTSAYLG SHSHIQGGTN LMADVNLNDY SSSSHFGMHV NPQHPVAGLS GIHVNPQHPV 420 AGQSGIQPSI IESQYSPQTI GNHGRSQWLY HQIFQEQQLP RAPHGANR*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MSRKFTNENI RSPTYNILGV AEFSENAGDD FAKWEEEEGE RGRGSLKMAP MVMADNTVAE  60
EPSTGVKEVD GNKEMGIAND FVEGRLPADK DGDGNTEETS DNVKDGNGLN GDQNLNVGDD  120
KTPQLGMVFK SYGEACYFYK QYAQSVGFAA TVRRSSFKEN GECLHLILAC CKWGKGREGE  180
EYQSRPTAKT NCQASIKLRH ALAVLKFQQV YEIPSHYILS RWQKDYKRLH LLEQSCDDVA  240
SKNLMEKYDY LSMRCLQLLE VGLISNDKYQ LALKLIREVE KQLLDDSLQG DGNQKNREDL  300
ATLQFGFSQN EQVHDSSQQV KRRGRPPKKR KEAEAEAITR SNTGMGSSMT ALVGDHRDVL  360
QVGPTSAYLG SHSHIQGGTN LMADVNLNDY SSSSHFGMHV NPQHPVAGLS GIHVNPQHPV  420
AGQSGIQPSI IESQYSPQTI GNHGRSQWLY HQIFQEQQLP RAPHGANR*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	3e-13	FAR1 family protein