PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_09.147
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 187aa    MW: 20904.4 Da    PI: 8.602
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_09.147genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS85.11.1e-266183185373
                          GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse.....sFlerflea 260
                                   r+e  +le ++ ++g ++  n++l  h+ ++ s ++    + +L  v++lsPk+vv+v  e+  n++     +F+e f+ea
  evm.model.AsparagusV1_09.147   6 RIELKDLEGIQASTGSVI-ANCML--HHQPQMSCESLALLRIFLGNVRKLSPKLVVLVKDELLSNTTkssptPFVEFFCEA 83 
                                   333334444444444444.45555..6666666666667779*******************766665557779******** PP

                          GRAS 261 leyysalfdsleak.lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakll 340
                                   ++++s++fd+++ + +++ +   ++vE+e+lg+++ + v++  ++               ++ GFk  p s  +++qak+l
  evm.model.AsparagusV1_09.147  84 MHHFSSMFDAMACSfYGEYKIGLRSVEKEILGPRVIDYVSQFPFR-SS------------SMEGFKLSPSSACNVSQAKYL 151
                                   ***********66515666688899****************9997.33............445****************** PP

                          GRAS 341 lrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   l  ++ +g++v++++g l l+Wk+rpL+ vS W
  evm.model.AsparagusV1_09.147 152 LGLFN-RGFSVQHDNGRLALCWKSRPLIGVSIW 183
                                   *****.*************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    
MLRFDRIELK DLEGIQASTG SVIANCMLHH QPQMSCESLA LLRIFLGNVR KLSPKLVVLV  60
KDELLSNTTK SSPTPFVEFF CEAMHHFSSM FDAMACSFYG EYKIGLRSVE KEILGPRVID  120
YVSQFPFRSS SMEGFKLSPS SACNVSQAKY LLGLFNRGFS VQHDNGRLAL CWKSRPLIGV  180
SIWVPT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-18GRAS family protein