PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_08.1856 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | bHLH | ||||||||
Protein Properties | Length: 243aa MW: 25569.2 Da PI: 10.562 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.2 | 2.5e-12 | 60 | 105 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq evm.model.AsparagusV1_08.1856 60 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 105 99***********************8.....6******************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
RGWFVQRFLW IDAAGCGESA AAAAFSSGSA AEFWGGAGFG XXXXXXQRVR ARRGQATDPH 60 SIAERLRRER IAERMKALQE LVPNANKTDK ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA 120 AVAPLVADIS SENRERGLTA TAAERPQQTT ANGNGAAKVE ANGARTWGGR CSTSQGKASA 180 LMPYLPAPHH PRARCHPGVS SSPPSSEHPT AALSSASSSP TCRVDGSSLP PSGVAYTTAR 240 TR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 65 | 70 | RLRRER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24260.1 | 1e-23 | bHLH family protein |