PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_08.1269

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

Protein Properties

Length: 388aa MW: 45158.8 Da PI: 9.8662

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_08.1269	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	43.2	7e-14	10	90	17	94
E--HHH.HTT.---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 v+p f++++ + + ++kt tl +++g sW v++ + + ++y+ ++GW +F +a++L+eg f+vF ++g+ f+++v evm.model.AsparagusV1_08.1269 10 VFPTAFVKQIvKAEIFKTKTATLISPNGGSWHVNVYMeyDSENCMYFSGDGWLRFIHAHKLQEGYFLVFCYKGNALFKFRV 90 78999999998444447889***********994455888888************************9987774443 PP
2	B3	54.2	2.6e-17	264	338	17	92
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 +p +f +++ + + + ltl+d++grsW+v+l++r ++ r+ +t+GW++F+ an+Lk gD ++F+l ++ +++ l evm.model.AsparagusV1_08.1269 264 NIPVEFRAANCLTEYN--SLTLMDPKGRSWQVQLRHRTNKFRTSITTGWNKFAAANELKLGDKCIFELGSEeNNGIL 338 5899998788555444..5***************999999***********************9877455544 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MHEKLWETKV FPTAFVKQIV KAEIFKTKTA TLISPNGGSW HVNVYMEYDS ENCMYFSGDG 60 WLRFIHAHKL QEGYFLVFCY KGNALFKFRV YDLSACDITS YASIDVHDDN GNENVKVNTK 120 SKNISKQKKM KEKIPVIMVE DEEEFEEDDG DKGREITEKE QQEKKKVLEG RLKKRRDILK 180 EGYEKENKES IDEKKMVKRK KKISEVKIEE EHEELIPKRK RKTSGEKTSE SDEPTIKRCM 240 NSGYTEMMKR NNSSPPRGIN KFENIPVEFR AANCLTEYNS LTLMDPKGRS WQVQLRHRTN 300 KFRTSITTGW NKFAAANELK LGDKCIFELG SEENNGILLM KVSIKKKESI DKKKMKEKKK 360 TSGVKFGGEH DELTPKKKRT TRDKTKE*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MHEKLWETKV FPTAFVKQIV KAEIFKTKTA TLISPNGGSW HVNVYMEYDS ENCMYFSGDG  60
WLRFIHAHKL QEGYFLVFCY KGNALFKFRV YDLSACDITS YASIDVHDDN GNENVKVNTK  120
SKNISKQKKM KEKIPVIMVE DEEEFEEDDG DKGREITEKE QQEKKKVLEG RLKKRRDILK  180
EGYEKENKES IDEKKMVKRK KKISEVKIEE EHEELIPKRK RKTSGEKTSE SDEPTIKRCM  240
NSGYTEMMKR NNSSPPRGIN KFENIPVEFR AANCLTEYNS LTLMDPKGRS WQVQLRHRTN  300
KFRTSITTGW NKFAAANELK LGDKCIFELG SEENNGILLM KVSIKKKESI DKKKMKEKKK  360
TSGVKFGGEH DELTPKKKRT TRDKTKE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	198	KKRRDILKEGYEKENKESIDEKKMVK
2	173	202	KKRRDILKEGYEKENKESIDEKKMVKRKKK
3	198	221	KRKKKISEVKIEEEHEELIPKRKR
4	199	222	KRKKKISEVKIEEEHEELIPKRKR
5	200	223	KRKKKISEVKIEEEHEELIPKRKR
6	358	381	KRKKKISEVKIEEEHEELIPKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01580.1	4e-09	B3 family protein