PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.855

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 378aa MW: 42343.3 Da PI: 6.8609

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.855	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.5	6.6e-18	131	178	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W++++ g+ R+ k+c++rw +yl evm.model.AsparagusV1_07.855 131 KGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 178 79****************************99**********97 PP
2	Myb_DNA-binding	45.1	2.4e-14	184	229	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l evm.model.AsparagusV1_07.855 184 RGNFTAHEEGMIIHLQAMLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 229 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence
MEVSRGIRLG LGDFVFYSVL VGRAAMYDLM TVYACYLVIV SGLGCTLILL TVWRRAGVAG 60 LAHFDHAGGG FLFLDAVADG AFYNVGASWR LSCNTISFWK RQALLAREEN IYQVLVVMGR 120 PPCCDKVGIK KGPWTPEEDI ILVSYIQQHG PGNWRSVPTN TGLLRCSKSC RLRWTNYLRP 180 GIKRGNFTAH EEGMIIHLQA MLGNRWAAIA SYLPQRTDND IKNYWNTHLK KKIKMLSPSK 240 DAYISSSDTD ILKPEIPEAT STTRSTTYAS STENISRLLE GWMRSSSPNA NTTINNSSNI 300 QMTVKENEVR DNEKELESLI LFENLSNTVN WDKLTTESDS EVKNEQPPLF FLEKWLLDEA 360 SGHVDELVDV SNTAMLI*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence

MEVSRGIRLG LGDFVFYSVL VGRAAMYDLM TVYACYLVIV SGLGCTLILL TVWRRAGVAG  60
LAHFDHAGGG FLFLDAVADG AFYNVGASWR LSCNTISFWK RQALLAREEN IYQVLVVMGR  120
PPCCDKVGIK KGPWTPEEDI ILVSYIQQHG PGNWRSVPTN TGLLRCSKSC RLRWTNYLRP  180
GIKRGNFTAH EEGMIIHLQA MLGNRWAAIA SYLPQRTDND IKNYWNTHLK KKIKMLSPSK  240
DAYISSSDTD ILKPEIPEAT STTRSTTYAS STENISRLLE GWMRSSSPNA NTTINNSSNI  300
QMTVKENEVR DNEKELESLI LFENLSNTVN WDKLTTESDS EVKNEQPPLF FLEKWLLDEA  360
SGHVDELVDV SNTAMLI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-90	MYB family protein