PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.3850
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family M-type_MADS
Protein Properties Length: 266aa    MW: 29407.7 Da    PI: 8.5784
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.3850genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.63.3e-231963145
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                                   krien+  rqv fskRr+g++KKA+ELS+LC+a+v++++fs+ gk
  evm.model.AsparagusV1_07.3850 19 KRIENEEARQVCFSKRRAGLFKKANELSILCGAQVSLLVFSPAGK 63
                                   79*****************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MATKRQRKPS IGRQKIEIKR IENEEARQVC FSKRRAGLFK KANELSILCG AQVSLLVFSP  60
AGKPFSFGHP SVDYVVDLLV FSPAGKPFSF GHPSVDYVVD RYLMGRANGP RESTSTSRGV  120
TLNVSGLNER YSSLTAKYEA EKKRKGGLER VMKEVWLGDG QLDGVGLEGL EWLKMRLESL  180
KREVEMVMMS HIIAPPPTTF EFCMAGNPVP YHEGCFGNFG ENQGQLYLPP PPPTLPFTSD  240
SVIIANGSNG FGYGEDYEEW LKGGF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-29M-type_MADS family protein