PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.3400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 220aa MW: 25128.3 Da PI: 8.2082 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53 | 4.4e-17 | 11 | 52 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i+n+ +r t+ kRrng++KK +ELS+LCd+ ++ i+++++ evm.model.AsparagusV1_07.3400 11 ISNDAKRRATLKKRRNGLFKKVNELSTLCDVPACAIVYAPDE 52 9*************************************9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 220 aa Download sequence |
MARKKVTLAW ISNDAKRRAT LKKRRNGLFK KVNELSTLCD VPACAIVYAP DEAQPEVWPM 60 EPEAKRILEH LKAMPESEQR KKRVNQEGFA MQRMVKLEEQ IFKQQREIRE LEMKIVMHQC 120 TAGRKLVDLG IEDLGILERL VDDTLKDVHE RIVQVRNLNP NLNSNPDAII VREEKPIMMM 180 DGCHGGGGGY LDDVVMKKPC MGSYENMLAL MDASSFYPF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVTLAWISNDAKRRATLKKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 7e-43 | M-type_MADS family protein |