PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.2728
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family WOX
Protein Properties Length: 279aa    MW: 31695.8 Da    PI: 6.5763
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.2728genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.15.6e-173090357
                                   --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                       Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                   +R+ +t++q+++L el++    r p+ae++++ +++l    +++ ++V++WFqN++a+e++
  evm.model.AsparagusV1_07.2728 30 SRWIPTADQIRILRELYYTngVRSPTAEQIQRNSARLrqygKIEGKNVFYWFQNHKARERQ 90
                                   8*****************7568*************************************97 PP
2Wus_type_Homeobox104.95.1e-342892265
              Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                   +++RW Pt++Qi+iL+ely+ +G+r+P++e+iqr +a+L++yGkie+kNVfyWFQN+kaRerqk+
  evm.model.AsparagusV1_07.2728 28 SSSRWIPTADQIRILRELYYtNGVRSPTAEQIQRNSARLRQYGKIEGKNVFYWFQNHKARERQKK 92
                                   789***************9989*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    
MDPSNQYQCN NNGGRSSSTS PSFLCRQSSS RWIPTADQIR ILRELYYTNG VRSPTAEQIQ  60
RNSARLRQYG KIEGKNVFYW FQNHKARERQ KKKLTMDNNI THNNNIINSD SNKFNTHTNV  120
VPNYGISSGL HDVGYDYGGS PTAFMERSIR DSSMSLGGGD HGSVVMEPTM PWMYHYIKDE  180
DPPTMVTRQI QTLPLFPTHS KDQEEEEDKE DDDSKYCCNN IDYCAQLNGY HACYLSTATS  240
VNQNQDNYHH HYTANGAAAS LELTLNSYYC SPQGFNSM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-36WOX family protein