PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_07.2491 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 27253.8 Da PI: 4.3169 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.3 | 3.7e-05 | 194 | 232 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R++i ++ Lr+++P+ ++k + +++L +A+ Y+ksL evm.model.AsparagusV1_07.2491 194 RKKIQEKVGVLRRIIPSG---KGKGKDTMAVLDEAIGYLKSL 232 99***************7...5555788************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MGEDFDPWQL RSFNCESNVG ASALDPKQST NPNYADPFGF FSPNPFSMQS SNPTGFTSDA 60 NRFMVFDRLG DETNPMYNNP FGSQFPYSYP SNAGTNVYNG NVNEEMHEED PEEIDALLYS 120 GSDNEQEYEE EEEEEEKTRE NLDGEEEEEE EEEVATSAVL HPSHPPSKRR RVDLSLADTA 180 SSTNCNSSAK KAKRKKIQEK VGVLRRIIPS GKGKGKDTMA VLDEAIGYLK SLRLKAKGLG 240 VGALK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 172 | KRRRV |
2 | 168 | 195 | KRRRVDLSLADTASSTNCNSSAKKAKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.1 | 1e-08 | bHLH family protein |