PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1875
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family FAR1
Protein Properties Length: 620aa    MW: 70372.3 Da    PI: 9.5992
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1875genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR189.35.2e-2861149289
                           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                    fYn+YA +vGF+vr+s+  +skr+++i++r++vCs+eg+r+ ++++ + k +r+r+ tr+gC+a+++vkk+ +gkw v+k
  evm.model.AsparagusV1_07.1875  61 FYNAYAAQVGFKVRVSSFIRSKRDKTIISRQLVCSREGFRSAKESNeEGKCKRPRMITRVGCRAMIMVKKQISGKWIVSK 140
                                    9***************************************99988845677899************************** PP

                           FAR1  81 leleHnHel 89 
                                    +e+ HnH l
  evm.model.AsparagusV1_07.1875 141 CEKIHNHLL 149
                                    *******87 PP
2FAR193.23.3e-29219308290
                           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                    fY+eYAk+vGF+ r+s+ ++skr+++i++r  vCskeg+r++++++ ++k +r+ra tr+gCka+++vk++++gkw v+k
  evm.model.AsparagusV1_07.1875 219 FYKEYAKRVGFRARVSSYYRSKRDNSIISRLIVCSKEGFRAKKDESgKDKLQRPRAITRIGCKAMIMVKRRDSGKWIVSK 298
                                    *****************************************999996788899*************************** PP

                           FAR1  81 leleHnHela 90 
                                    l ++HnH l 
  evm.model.AsparagusV1_07.1875 299 LIKNHNHLLI 308
                                    *******986 PP
3FAR191.31.2e-28357445289
                           FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                                    fY +Y+++vGF++r+s+ ++skr+++i++r fvCskeg+  +++ + + k++r+r+ tr+gCka+l+vkk+++gkw+v+k
  evm.model.AsparagusV1_07.1875 357 FYLAYSRRVGFNMRVSTYYRSKRDKSIISRLFVCSKEGYYVKKDAAaEGKTKRPREATRVGCKAMLMVKKSNSGKWVVSK 436
                                    9*************************************998887775788999*************************** PP

                           FAR1  81 leleHnHel 89 
                                    +e+eHnH+l
  evm.model.AsparagusV1_07.1875 437 FEKEHNHAL 445
                                    *******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    
MEGLMFSSPM IISPVDVEPR MEDVDEMIEN SVARELFACE GEVFEPYEGM EFDSEEAARA  60
FYNAYAAQVG FKVRVSSFIR SKRDKTIISR QLVCSREGFR SAKESNEEGK CKRPRMITRV  120
GCRAMIMVKK QISGKWIVSK CEKIHNHLLG TQGKVVMLGF DPYAREGEVI ENPIPRDSNF  180
YNRMMDNPLE MVIVPPEGEP DLEPHEGMEF ESEQEAQTFY KEYAKRVGFR ARVSSYYRSK  240
RDNSIISRLI VCSKEGFRAK KDESGKDKLQ RPRAITRIGC KAMIMVKRRD SGKWIVSKLI  300
KNHNHLLIPR TESGDEHSEA EDHEMVETEN ALVVQGDSIS EPYEGLEFES EEAAKVFYLA  360
YSRRVGFNMR VSTYYRSKRD KSIISRLFVC SKEGYYVKKD AAAEGKTKRP REATRVGCKA  420
MLMVKKSNSG KWVVSKFEKE HNHALGSMRK KRRLQKRNFF SGNMKKLKDK TELQHTDLES  480
ATSRYNSLCR EAIKYAEVGA TSADSYNVAL HALREAARKV VAIKKSVGAD QKLGGGSSNV  540
EENVNTGLQV RAAIHQNFNM STHPSNPQPK LSYERPSQKL RMCNTCKQPS NHTGWTCPTG  600
QVSRVSTEPA DTPMSQSMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1450470KKRRLQKRNFFSGNMKKLKDK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.13e-45FAR1 family protein