PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1806
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HRT-like
Protein Properties Length: 512aa    MW: 57185.5 Da    PI: 9.9904
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1806genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like49.66.4e-16263293131
                       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                                    iCGv++++GsvCk++P+ +RKRCeeHKG++i
  evm.model.AsparagusV1_07.1806 263 ICGVAIGNGSVCKNKPMMERKRCEEHKGKKI 293
                                    8***************************997 PP
2HRT-like47.62.8e-15312339128
                       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 
                                    +CGv l+dGs C + P+ gRKRCe HKG
  evm.model.AsparagusV1_07.1806 312 TCGVVLKDGSLCAELPAYGRKRCEMHKG 339
                                    7**************************9 PP
3HRT-like49.57.1e-16380409130
                       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                                    iCGvi +dG +C+++Pv gRKRC+eHKG+R
  evm.model.AsparagusV1_07.1806 380 ICGVIDDDGRMCRNTPVWGRKRCAEHKGQR 409
                                    8****************************9 PP
4HRT-like39.97.4e-13432461131
                       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                                    iCG+   +G +C+r+P+ gRKRCe HKG+Ri
  evm.model.AsparagusV1_07.1806 432 ICGAV-TNGHICRRKPASGRKRCEDHKGQRI 461
                                    79975.69**********************7 PP
5HRT-like53.54.1e-17480510131
                       HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                                    +CG++l++Gs C+++Pv gRKRCe HKG++i
  evm.model.AsparagusV1_07.1806 480 VCGIALSNGSSCQKTPVTGRKRCELHKGRKI 510
                                    7***************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    
MFLFPSSSSS SPGSKFRLKR EGCKRTQHDH VFSKWEILIG SSDWEDFSLG KDGVQRYRTH  60
NLPNGSSCPG LYELGIAVIS KDDGRKARML DSQTIIVVYL GQTNNVRTRL QQYGRVGAHL  120
HSGRLISSEG KECSGLFTDV FSRGYSIMFR WAPMVDKKKA EKTEAELLAV FDYAWNKSGN  180
GVCRHDEILS KLDGKRTAQI STFRRKLQPW KHPAFGSKAG INIDDSVPLD DQKGFLPSLV  240
FKFRKSQLRF VHADNSFYED HKICGVAIGN GSVCKNKPMM ERKRCEEHKG KKIVGGVPVS  300
VRFPAMEEAT TTCGVVLKDG SLCAELPAYG RKRCEMHKGS IITKLEPHNM AVVLFEDQKE  360
TPISKRQSQV VVKHEQEYSI CGVIDDDGRM CRNTPVWGRK RCAEHKGQRA TASNLRLPTS  420
RECWETAENG NICGAVTNGH ICRRKPASGR KRCEDHKGQR ITEMLPGKSI GVKENYNVSV  480
CGIALSNGSS CQKTPVTGRK RCELHKGRKI T*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.11e-83HRT-like family protein