PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_07.175

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB_related

Protein Properties

Length: 642aa MW: 70418 Da PI: 9.9229

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_07.175	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.5	1.3e-07	541	590	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ evm.model.AsparagusV1_07.175 541 RRPFSVAEVEALVQAVEKLGTGRWRDVKIRAFdnaKHRTYVDLKDKWKTL 590 6789999*****************9999989************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 642 aa Download sequence
MVLHKRLDYG SSGYRVPPMP RVPRSARGKR SVRKKVDDKK QISAFDLLAT VAGELLSSER 60 ENSPPPCTIS AGANIKQEQK DNEIPFKAEV FDQGSCNESA LGSSESMFKR QVGTPKSLEK 120 NAGELVAEDG IKTPLQGERR INGNLIGKII PEILEDPMDL DAKPPPALVS SDSSVEVPIS 180 RNSPFYKCRN GMDIVDDDEN SSGCTHPSAN IAKAFRPQRI GDSRIRKLLA SNFWKVPLAT 240 LKDGELSNTD VELKPSFRSR KMCYTRQRTQ RSSFKRRKLF QRRSVSASAG GIYGEGITKS 300 PKFGGIKIEA SDALASLKGA NGASSSTTGS KSSYESGDYH VKFSIKSFKV PELFIEIPET 360 ATVGSLKRTV MEAVTAILAG GLRVGVLLQG KKVRDDKQTL LQAGISHNDK MENLGFTLEP 420 NSAQAPPTLL CSEDPNSLLP PNPNPNPCAL TEPIERIQAP TPAIEQWLPE TTTPEPHRTS 480 TLNNGVDSDH ESVHSHTEAS SVDKQASSKA LVPVPDMNAD PLAVVPLRKS RRAELVQRRI 540 RRPFSVAEVE ALVQAVEKLG TGRWRDVKIR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ 600 RRGEPVPQEL LDRVLSAHAY WSQQQAKLQA KPGQAEPCLL I*

Sequence ? help Back to Top

Protein Sequence Length: 642 aa Download sequence

MVLHKRLDYG SSGYRVPPMP RVPRSARGKR SVRKKVDDKK QISAFDLLAT VAGELLSSER  60
ENSPPPCTIS AGANIKQEQK DNEIPFKAEV FDQGSCNESA LGSSESMFKR QVGTPKSLEK  120
NAGELVAEDG IKTPLQGERR INGNLIGKII PEILEDPMDL DAKPPPALVS SDSSVEVPIS  180
RNSPFYKCRN GMDIVDDDEN SSGCTHPSAN IAKAFRPQRI GDSRIRKLLA SNFWKVPLAT  240
LKDGELSNTD VELKPSFRSR KMCYTRQRTQ RSSFKRRKLF QRRSVSASAG GIYGEGITKS  300
PKFGGIKIEA SDALASLKGA NGASSSTTGS KSSYESGDYH VKFSIKSFKV PELFIEIPET  360
ATVGSLKRTV MEAVTAILAG GLRVGVLLQG KKVRDDKQTL LQAGISHNDK MENLGFTLEP  420
NSAQAPPTLL CSEDPNSLLP PNPNPNPCAL TEPIERIQAP TPAIEQWLPE TTTPEPHRTS  480
TLNNGVDSDH ESVHSHTEAS SVDKQASSKA LVPVPDMNAD PLAVVPLRKS RRAELVQRRI  540
RRPFSVAEVE ALVQAVEKLG TGRWRDVKIR AFDNAKHRTY VDLKDKWKTL VHTARISPQQ  600
RRGEPVPQEL LDRVLSAHAY WSQQQAKLQA KPGQAEPCLL I*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-114	MYB_related family protein