PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_07.1252
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family GRAS
Protein Properties Length: 519aa    MW: 58013.8 Da    PI: 6.9808
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_07.1252genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS264.82.9e-811435142374
                           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......ss 75 
                                    v lLl++Ae vs+++ ++a+alL++    +s++g+++qR++ yf  AL++r+ r++ e++++ + +  + +       + 
  evm.model.AsparagusV1_07.1252 143 VGLLLSAAEKVSNEQYNRAKALLSQCTRSSSKYGSAVQRVVYYFCDALQERIDRETGEMSSKGNKKIGAMMPrdlmkaVL 222
                                    679***************************************************88888887765544432222433222 PP

                           GRAS  76 eelaalkl.fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg 153
                                    ++  + +l  +++ P+ ++ h+ta qa+l++v++++r+HiiD++i++G QW  +l+ La+R+  +  s+ i +vg+    
  evm.model.AsparagusV1_07.1252 223 TNHPV-QLiANNTLPFTQVLHFTAIQALLDSVASARRIHIIDLSIKYGQQWTFFLHGLATRRsLPIESVTISAVGA---- 297
                                    22233.33599************************************************99834556*********.... PP

                           GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvks 233
                                     +e l+ tg+rL +fAe+l ++f+f++++  ++++++ ++++++ gE++ +  +l + +l  ++ sl++    v++++++
  evm.model.AsparagusV1_07.1252 298 AEEILSMTGKRLWSFAESLSLHFKFKPVIIPDMKEMTESMFELEVGEVVGIYTSLDMNNLIMRPESLDN----VMRVFWK 373
                                    99***********************************************************88888888....******* PP

                           GRAS 234 lsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetle 313
                                    l+P +v+v++ ea+hns+sF +rf+eal +y a f++++  + + +e r ++E + l++  +  va+eg+er+ r+  + 
  evm.model.AsparagusV1_07.1252 374 LKPCLVTVIDVEANHNSPSFIKRFTEALFFYGAYFECFDCLMEKSDERRLMIEGV-LSQGMKCTVAAEGSERVVRQVGVC 452
                                    ***************************************9986666666666666.************************ PP

                           GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                     Wr+ ++++G++++ lse  + qa+ll++++  ++  ++  +s++l+ gWk+ pL +vSaW+
  evm.model.AsparagusV1_07.1252 453 VWRAFFRRFGLREADLSEWSMYQAHLLIKRFVeDNSCTLAMNSKALLVGWKGTPLHFVSAWK 514
                                    *******************************988889************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    
MSDPFLTREG HTSNKNHPFE EFLDGCATKP DQFLSAETEG GRGLDGFFSR YTSDDKEAPP  60
SLTLLEIPEG HRPSREGLSR KLSMHSVGGG RAQLSTEEVV KVAAALYIQA SALVAGHPTN  120
LRLPFGLLLS SLGAEDLKGV ELVGLLLSAA EKVSNEQYNR AKALLSQCTR SSSKYGSAVQ  180
RVVYYFCDAL QERIDRETGE MSSKGNKKIG AMMPRDLMKA VLTNHPVQLI ANNTLPFTQV  240
LHFTAIQALL DSVASARRIH IIDLSIKYGQ QWTFFLHGLA TRRSLPIESV TISAVGAAEE  300
ILSMTGKRLW SFAESLSLHF KFKPVIIPDM KEMTESMFEL EVGEVVGIYT SLDMNNLIMR  360
PESLDNVMRV FWKLKPCLVT VIDVEANHNS PSFIKRFTEA LFFYGAYFEC FDCLMEKSDE  420
RRLMIEGVLS QGMKCTVAAE GSERVVRQVG VCVWRAFFRR FGLREADLSE WSMYQAHLLI  480
KRFVEDNSCT LAMNSKALLV GWKGTPLHFV SAWKFQEE*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.14e-52GRAS family protein