PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_05.3497
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family SBP
Protein Properties Length: 329aa    MW: 36253.8 Da    PI: 9.0709
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_05.3497genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.51.4e-41109186178
                                    --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                            SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                    +Cq+egC+adls ak+yhrrhkvCe+hska+vv++ g++qrfCqqCsrfh l efDe+krsCr+rLa+hn+rrrk+q+
  evm.model.AsparagusV1_05.3497 109 RCQAEGCKADLSGAKHYHRRHKVCEFHSKATVVIAGGTQQRFCQQCSRFHVLAEFDESKRSCRKRLADHNRRRRKPQN 186
                                    6**************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    
MMNRLHSSSS SASDPYYPFN GLDNNWDVTQ SNYTHQGFDP PLPPIPMSTS FPFYSPQIGF  60
VKREDAFGVG AGSRPIGLNL GHRTYFSSCD ALAIDRLLMG RLHNQHQPRC QAEGCKADLS  120
GAKHYHRRHK VCEFHSKATV VIAGGTQQRF CQQCSRFHVL AEFDESKRSC RKRLADHNRR  180
RRKPQNNNNS SNNNNNSASS STTTNSSDKT KHNAPRPLRD SNASKCTTAS TTTGSGALEV  240
NQGEQNEGSL YRKGPALSLG GAQQLLHNNY QHHFSPSTTS DSITSSFYHQ SLFGPSPHEP  300
SQPGGSGSDQ HQTNLLHLGQ AMFEVDFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167184KRSCRKRLADHNRRRRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-48SBP family protein